DY270367

Overview
NameDY270367
Unique NameDY270367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1314
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_SPIOL (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.577e-39
Identity = 85/183 (46.45%), Postives = 110/183 (60.11%), Query Frame = 3
Query:    6 SVPFERRTLPVLS---ATTMQASQFLVTSTKPPAACSPLVPNPAHHRLTAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            S PF+ R LP  S     + ++ +F + ST                   ++SS      +    +PP+      THSMP EK+E+FKSLE WA  N+L  LKPVEKCWQPQ +LPDP     DF DQV+ ++ER   +PDD +VVLVGDMIT+ A+PTYQTM+NTLDG +DETGAS    A+W
Sbjct:    9 STPFQCRRLPSFSPRQTPSRRSPKFFMAST------------------LSSSSPKEAESLKKPFSPPREVHVQVTHSMPQEKIEIFKSLEGWAEENLLVHLKPVEKCWQPQDYLPDPAS--EDFRDQVKEIQERAKEIPDDLYVVLVGDMITEEALPTYQTMLNTLDGAKDETGASPTSWAVW 171          

HSP 2 Score: 29.6462 bits (65), Expect = 2.577e-39
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  173 RAWTAEENRHGDLLNKYLYLSGRVDMRSIEK 203          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_HELAN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.358e-39
Identity = 76/135 (56.30%), Postives = 91/135 (67.41%), Query Frame = 3
Query:  141 TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            T  S+T +         PP+       HSMPP+K+E+FKS+E WA NN+L  LKPVEKCWQ Q FLPDP      F +QV  LR R   +PDDYFVVLVGDMIT+ A+PTYQTM+NTLDGVRDETGA+     +W
Sbjct:   36 TIGSATTKVESTKKPFTPPREVHQQVLHSMPPQKIEIFKSMEGWAENNILVHLKPVEKCWQAQDFLPDPAS--DGFMEQVEELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGATLLLGLVW 168          

HSP 2 Score: 31.5722 bits (70), Expect = 3.358e-39
Identity = 16/36 (44.44%), Postives = 22/36 (61.11%), Query Frame = 1
Query:  523 GLFGNRARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            GL   RA T EENRHGDL   ++ +  ++ M  I+K
Sbjct:  165 GLVWTRAWTAEENRHGDLLHQYLYLSGRVDMRQIQK 200          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_ORYSJ (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.359e-39
Identity = 80/162 (49.38%), Postives = 105/162 (64.81%), Query Frame = 3
Query:   69 FLVTSTKPPAACSPLVPNPAH--HRLTAASSTV-RFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            F  + T  P +C  +    ++   ++ A +ST+ R +       PP+       HS+PP+K E+F SL+ WA  N+L LLKPVEK WQPQ FLPDP+     F D+V+ LRER   +PDDYFV LVGDM+T+ A+PTYQTM+NTLDGVRDETGAS    A+W
Sbjct:    3 FAASHTASPYSCGGVAQRRSNGMSKMVAMASTINRVKTAKKPYTPPREVHLQVKHSLPPQKREIFDSLQPWAKENLLNLLKPVEKSWQPQDFLPDPSS--DGFYDEVKELRERAKEIPDDYFVCLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTTWAVW 162          

HSP 2 Score: 31.187 bits (69), Expect = 3.359e-39
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   +M +  ++ M  IEK
Sbjct:  164 RAWTAEENRHGDLLNKYMYLTGRVDMKQIEK 194          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STADS_BRANA (Acyl-[acyl-carrier-protein] desaturase, seed specific, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.426e-39
Identity = 84/162 (51.85%), Postives = 106/162 (65.43%), Query Frame = 3
Query:   72 LVTSTKPPAACSPLVPNPAHHRLTAASS-TVRFRQISAVAAPPKPKT-------HSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            L +S +PP +      +P    L ++SS  +  +++ ++  P  P         HSMPP+K+E+FKS+E  A  N+LP LK VEK WQPQ FLPDP      F DQV+ LRER   LPDDYFVVLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS    A+W
Sbjct:   15 LASSARPPVST---FRSPKFLCLASSSSPALSSKEVESLKKPFTPPREVHLQVLHSMPPQKIEIFKSMEDRAEQNLLPHLKDVEKSWQPQDFLPDPAS--DGFEDQVKELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAVW 171          

HSP 2 Score: 30.0314 bits (66), Expect = 7.426e-39
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  173 RAWTAEENRHGDLLNKYLYLSGRVDMRQIEK 203          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_OLEEU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.677e-37
Identity = 74/135 (54.81%), Postives = 90/135 (66.67%), Query Frame = 3
Query:  141 TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            T  S ++   ++     PP+      THS+ PEK E+F SL  WA  N+L LLK V+KCWQP  FLPD       F +QV  LR+R   +PDDYF+VLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS  P AIW
Sbjct:   30 TIHSPSMEVGKVKKPFTPPREVHVQVTHSLAPEKREIFNSLNNWAQENILVLLKDVDKCWQPSDFLPDSAS--EGFDEQVMELRKRCKEIPDDYFIVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIW 162          

HSP 2 Score: 30.0314 bits (66), Expect = 8.677e-37
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  164 RAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 194          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_LINUS (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.267e-31
Identity = 68/106 (64.15%), Postives = 76/106 (71.70%), Query Frame = 3
Query:  219 PPEKVEVFKSLETWATNNVL-PLLKPVEKCWQPQYFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            P    E+FKSL      +VL   LKPVEKCWQPQ FLP+P      F +QV+ LR R   LPDDYFVVLVGDMIT+ A+PTYQTM+NTLDGVRDETGAS  P AIW
Sbjct:   65 PTGSWEIFKSLGRLGLRDVLISHLKPVEKCWQPQDFLPEPES--DGFEEQVKELRARAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIW 168          

HSP 2 Score: 30.0314 bits (66), Expect = 1.267e-31
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  170 RAWTAEENRHGDLLNKYLYLSGRVDMRQIEK 200          
BLAST of DY270367 vs. ExPASy Swiss-Prot
Match: STAD_CORSA (Omega-12 acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Coriandrum sativum PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.468e-29
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  222 PEKVEVFKSLETWATNNVLPLLKPVEKCWQPQYFLPDPTLPFSD-FTDQVRALRERTAGLPDDYFVVLVGDMITDNAIPTYQTMINTLDGVRDETGASSRPRAIW 533
            PE  E+F SLE WA +N+L  LK VE  WQPQ +LPDPT   SD F DQV+ +RER   +PD+YFVVLVGDMIT+ A+PTY +M+N  DG++D+TGA     A W
Sbjct:   55 PEVDELFNSLEGWARDNILVHLKSVENSWQPQDYLPDPT---SDAFEDQVKEMRERAKDIPDEYFVVLVGDMITEEALPTYMSMLNRCDGIKDDTGAQPTSWATW 156          

HSP 2 Score: 30.0314 bits (66), Expect = 1.468e-29
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  538 RARTDEENRHGDLPLTFMNIPCQIHMIYIEK 630
            RA T EENRHGDL   ++ +  ++ M  IEK
Sbjct:  158 RAWTAEENRHGDLLNKYLYLSGRVDMRMIEK 188          
The following BLAST results are available for this feature:
BLAST of DY270367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_SPIOL2.577e-3946.45Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_HELAN3.358e-3956.30Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ORYSJ3.359e-3949.38Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STADS_BRANA7.426e-3951.85Acyl-[acyl-carrier-protein] desaturase, seed speci... [more]
STAD_OLEEU8.677e-3754.81Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_LINUS1.267e-3164.15Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CORSA1.468e-2957.14Omega-12 acyl-[acyl-carrier-protein] desaturase, c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270367 ID=DY270367; Name=DY270367; organism=Citrus clementina; type=EST; length=1314bp
CAAAATCAGTTCCTTTTGAAAGACGCACACTCCCTGTGCTAAGTGCCACC
ACCATGCAAGCATCTCAGTTTCTCGTCACTTCCACCAAACCTCCTGCTGC
GTGCTCTCCACTTGTCCCTAATCCCGCCCACCATCGTCTCACCGCCGCAT
CCTCCACCGTCCGATTCCGGCAAATCTCCGCCGTCGCAGCACCACCGAAA
CCAAAAACACATTCAATGCCACCCGAAAAAGTCGAAGTCTTCAAGTCACT
AGAAACCTGGGCCACCAATAACGTGTTACCATTACTCAAACCAGTAGAGA
AATGCTGGCAGCCCCAATACTTCTTACCCGATCCGACGCTGCCTTTTTCG
GACTTCACTGACCAAGTCAGGGCCCTACGTGAACGCACTGCGGGGCTACC
TGACGATTACTTTGTTGTGCTGGTGGGTGACATGATCACTGATAACGCCA
TTCCCACTTATCAGACGATGATTAATACGCTTGATGGTGTCAGAGATGAG
ACCGGTGCAAGTTCCCGCCCACGGGCTATTTGGGAACCGCGCCCGGACTG
ATGAGGAAAACCGCCATGGAGACTTGCCTCTGACCTTCATGAATATACCA
TGTCAGATACACATGATTTATATTGAAAAAAAACCCATAATTCCTTTATA
CTTCTAGATATCTTTTCCCTACCTTACAACCATCTCGAAACCAACATTAT
ATTTCATATTATCTCGACGTACCTGCCCCTCTGTCTCCTCATCTCTTTTA
TTTAGTCTTGATTCATTATATTTCATAATCTTCTACGTAAATAATCACTC
AATCGGCCCACTCCACCCAAATTCCTACCTCCAAATTTCCCTTAGCACCC
TGCGTGTGGCATATACCGAAGTACTTCTAGCTTTACACCAGTTAACTCTA
TTTTTTTCACTGATAATTCCTTTTTTGTATATATCTACTACTCTATCTAC
TTACATGCCTACGTACAACCGCACTCAGCCCCAAACTCGACTCCCACACA
TAACACACACTCAATTGTTTCTATAAACCTCAAGTATCCTCGCATATGCA
CAATCATCTGCTCTATTACTCATTCCCGAATAAATCAACTCATTATACTC
TCGATATATCCCCAGCTTTATCGTTACATTAAATTATCATAACCTTTGAA
TTCGTCATTATTTTTTTCCTTTCTCTATTTAATTTAACTTCATTATAGCT
AACATTTACATATTATGCTTATATCGATAATATAAGCTGTACTGCAATAT
TGACCTGTTTACTAATCACTTATATCTACTAACGCTACCTAAAGCTAAAC
ACATCAGCTCACGC
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