DY270368

Overview
NameDY270368
Unique NameDY270368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 4.795e-60
Identity = 112/160 (70.00%), Postives = 135/160 (84.38%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            ++KLF RW  +D+ ++DISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT+ LMM GR+NGKKL+A RIVKHA EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNIK     LA
Sbjct:   42 EIKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLA 200          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.068e-59
Identity = 115/166 (69.28%), Postives = 137/166 (82.53%), Query Frame = 2
Query:  107 PSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            P+    +V LF +W+ + V V+DISL DYI V+  K A Y+PH+AGR+ V+RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHA EII+LLT +NP+QV+V+AVINSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE+AFRN+K     LA
Sbjct:   16 PATEAPEVALFGKWSLQSVNVSDISLVDYIPVKE-KSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLA 180          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 2.380e-59
Identity = 111/168 (66.07%), Postives = 136/168 (80.95%), Query Frame = 2
Query:  101 QDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            ++  Q   ++KLFN+W+FE+V+V D SL DY+ V   +   +V HTAGRY+ KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AVRI+KH ++II++LTDQNPIQV+VDA+ N+GPRED TR+G  G  RRQAVD+SPLRRVNQAI LLT GARE+AFRNIK     LA
Sbjct:   31 EEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQV---RQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLA 195          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.656e-58
Identity = 115/124 (92.74%), Postives = 116/124 (93.55%), Query Frame = 2
Query:  233 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            HTAGRY  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYLLTTGARESAFRNIK     LA
Sbjct:    1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLA 124          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.596e-55
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = 2
Query:  128 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            +KLFN++ FE V+V DISL DYI +   +    +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+    LA
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLA 173          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.596e-55
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = 2
Query:  128 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            +KLFN++ FE V+V DISL DYI +   +    +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+    LA
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLA 173          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.549e-53
Identity = 104/160 (65.00%), Postives = 127/160 (79.38%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            +V LF +W++  V   DISL DYI V   K   + PH+AGRY+  RFRKAQCPIVERL NS+MM GRN GKK+MAVRI++ A EII+LLTD+NP+QV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RRVN A+YLLT G R +AFRNI+     LA
Sbjct:    4 EVALFGKWSYSGVTCPDISLQDYICV---KKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLA 160          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 4.409e-39
Identity = 74/152 (48.68%), Postives = 102/152 (67.11%), Query Frame = 2
Query:  128 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIK 583
            ++LF +W++  V+V D SL  YI ++      ++PHT GR+  +RF KA+ PIVERL N LM  GRN GKK +A  IVK A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+QA+  +  GAR+ AF N K
Sbjct:   21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPK 168          

HSP 2 Score: 38.1206 bits (87), Expect = 4.409e-39
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  570 FVTSRTIAECLPDELINAAKGSSNSYAIQKKDEI 671
            F   + I ECL +ELI AA+G   SYAI++K+EI
Sbjct:  164 FNNPKPIEECLAEELILAARGDPRSYAIRQKEEI 197          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.767e-38
Identity = 72/151 (47.68%), Postives = 104/151 (68.87%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRN 577
            ++ LF ++++E+V+VN++SL  YI +        VPH A   +     KA+ PI ER   SLM HGRN+GKK +A+ I + A  IIH +T +NP+QV+VDA++NSGPRED  RIG AG +RR +VD+SPL+R++ AI  L+ G R ++FRN
Sbjct:   22 EINLFEKYSYEEVKVNNVSLRPYINLS---RRGIVPHAATTITKGTTGKARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAISNLSAGIRNASFRN 169          

HSP 2 Score: 36.1946 bits (82), Expect = 4.767e-38
Identity = 19/43 (44.19%), Postives = 26/43 (60.47%), Query Frame = 3
Query:  561 NLLFVTSRTIAECLPDELINAAKGSSNSYAIQKKDEI*KSGKS 689
            N  F    T+AE + +ELI A+  S NSYA+ KK EI +  +S
Sbjct:  164 NASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQS 206          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_DESMO (30S ribosomal protein S7P OS=Desulfurococcus mobilis GN=rps7p PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.720e-37
Identity = 72/151 (47.68%), Postives = 102/151 (67.55%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRN 577
            ++KLFN+W+++ ++V D SL  YI ++      Y+PHT GR+  +RF K   PIVERL N +M  GRN GKK +A  IVK A +IIH+ T +NPIQV+V A+ N+ PRE+ TRI   G+    +VD++PLRR++ A+  LT GAR  AF +
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHTGGRHEHRRFGKTHVPIVERLINKVMRPGRNMGKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAIENAAPREETTRIMYGGITYHVSVDVAPLRRIDLALRHLTEGARMKAFHS 159          

HSP 2 Score: 32.3426 bits (72), Expect = 6.720e-37
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  588 IAECLPDELINAAKGSSNSYAIQKKDEI 671
            I E L +E++ AA     SYAIQKK+EI
Sbjct:  163 IEEALAEEIVLAASNDPKSYAIQKKEEI 190          
The following BLAST results are available for this feature:
BLAST of DY270368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5B_DROME4.795e-6070.0040S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_CAEEL1.068e-5969.2840S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5_YEAST2.380e-5966.0740S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5_NICPL7.656e-5892.7440S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5B_SCHPO1.596e-5569.8140S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO1.596e-5569.8140S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_DICDI2.549e-5365.0040S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS7_AERPE4.409e-3948.6830S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS5_ENCCU4.767e-3847.6840S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_DESMO6.720e-3747.6830S ribosomal protein S7P OS=Desulfurococcus mobil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270368 ID=DY270368; Name=DY270368; organism=Citrus clementina; type=EST; length=1259bp
CAGCGAGCGGCCTTCGATTCTTATTATTTTATCTCTCTCGCTCTCTCACT
CTCTCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTATTGGCACAATCT
CAAGACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGAC
TTTCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCG
TGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTAC
TCAGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTAC
GAACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCG
TCAGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAG
AACCCAATTCAAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGA
AGATGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGG
ATATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACT
GGTGCTCGTGAATCTGCTTTTCGTAACATCAAGAACTATTGCCGAATGCT
TGCCCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCC
ATCCAGAAAAAGGATGAAATTTGAAAGAGTGGCAAAAGCCAATCCCTGAT
GACGTGAAAGTGGAAAAACAAATGTCAAAATTTTATTTTTAAAAAAAAAA
AAAACTTTTGGACAAATGTTTTTTTCTATTTAAATAATTTTTTTTAAACT
TTAAGAAAAAATAAAATTAAGGCTAAATTTAGATGCATCATTGCCTCTTA
TGTCAAGCGAGGTTACATCTATACTAACCCATTAACACAATACCAAAATT
ATCTAAACATTCTACAATCCACGAGCTGCCTTAATAACCCACACTCAATG
CAAACATTCTTACTAGGAATCCAAATCATACTAATAAAAGAACTTCTAAC
TCATTCTTTTTATTACTTTTTCTCAAAAATATAAACGATTTTTCACACCA
ATTTACATTTTTCGCCACTATCCTTAATATTCTCCCATTACAATTTGTTA
AATATTTATGAAAAAGAACCTACTAACAGACCAATCAATTTGCAATCTAT
TCACAATATGCTAATCGACATACCACCAATAGCATAAGAATATAACAATT
TAAGAGATACACAAACTAAATAAATGACATAAGAACCAACTTAGAAATAC
AAATAACTA
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