DY270368

Overview
NameDY270368
Unique NameDY270368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3589 contig Ccv1_Contig3589:1..1257. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.450e-37
Identity = 73/117 (62.39%), Postives = 94/117 (80.34%), Query Frame = 2
Query:  254 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            +K FRK QCPIVERL   +M HG+N+GKKL+A+R+V+ + EIIHLLT++NPIQV+VDA+IN+ PRED+TR+G+ G VR QAVD+SPLRR+N A+YLL  G R  AFRN K+    LA
Sbjct:    2 IKPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLA 118          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.930e-36
Identity = 76/152 (50.00%), Postives = 97/152 (63.82%), Query Frame = 2
Query:  128 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIK 583
            V LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +II+  T QNPIQV+VDA+IN  PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K
Sbjct:   40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPREEVTRIIMGGIAYTVSVDVSPQRRLDLALRWITEGARTCSFNNPK 187          

HSP 2 Score: 35.4242 bits (80), Expect = 1.930e-36
Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  570 FVTSRTIAECLPDELINAAKGSSNSYAIQKKDEI 671
            F   + I ECL DE+I AA     SYA++K++E+
Sbjct:  183 FNNPKPIEECLADEIIAAASNDPRSYAVRKREEL 216          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.521e-36
Identity = 73/151 (48.34%), Postives = 104/151 (68.87%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRN 577
            ++KLFN+W+++ ++V D SL  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN GKK +A  IVK + E+I+L T +NP+QV+V A+ N+ PRE+ TRI   G+    +VDI+PLRR++ A+  LT GAR  AF N
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPREETTRIMYGGITYHVSVDIAPLRRIDLALRHLTEGARLKAFHN 159          

HSP 2 Score: 30.8018 bits (68), Expect = 2.521e-36
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 3
Query:  585 TIAECLPDELINAAKGSSNSYAIQKKDEI 671
            +I E L +E+  AA     SYA+QKK+EI
Sbjct:  162 SIEEALAEEIALAASNDPKSYAVQKKEEI 190          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.605e-35
Identity = 74/154 (48.05%), Postives = 103/154 (66.88%), Query Frame = 2
Query:  122 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIK 583
            Y++K+F +W   +V+V D  L DYI ++      Y+PHT GR++ KRF KA+ PIVERL N +M   +N GKK +A  IVK A +IIH  T +NPIQV+V A+ N+ PRE+ T I   G+   +AVD SP RR++ A+ L+T GA++ AFRN K
Sbjct:   11 YEMKVFGKWDPTEVEVRDPGLKDYICLKPM----YLPHTGGRHAKKRFAKAEVPIVERLINRVMRTEKNTGKKHLAYNIVKRAFDIIHERTGENPIQVLVQALENAAPREETTTIIYGGISYHEAVDSSPQRRLDIALRLITEGAQQRAFRNPK 160          

HSP 2 Score: 30.4166 bits (67), Expect = 1.605e-35
Identity = 13/34 (38.24%), Postives = 23/34 (67.65%), Query Frame = 3
Query:  570 FVTSRTIAECLPDELINAAKGSSNSYAIQKKDEI 671
            F   + I ECL +E+I AA+  +  ++I++K+EI
Sbjct:  156 FRNPKPIEECLAEEIIAAARYDTECHSIRRKEEI 189          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.085e-35
Identity = 72/150 (48.00%), Postives = 96/150 (64.00%), Query Frame = 2
Query:  134 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIK 583
            LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +I++  T QNPIQV +DA++N+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K
Sbjct:   42 LFGKWSFENVVVRDPGLRRYICLKPV----VLPHTEGRYQNYRFGKARIPIVERLINLMMRPGRNAGKKHKAYNIVKRAFDIVYYKTGQNPIQVFIDAIVNTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPK 187          

HSP 2 Score: 35.4242 bits (80), Expect = 2.085e-35
Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  570 FVTSRTIAECLPDELINAAKGSSNSYAIQKKDEI 671
            F   + I ECL DEL+ AA     SYA++K++E+
Sbjct:  183 FNNPKPIEECLADELVAAAANDPKSYAVRKREEL 216          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.715e-35
Identity = 71/152 (46.71%), Postives = 97/152 (63.82%), Query Frame = 2
Query:  128 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIK 583
            + LF +W++EDV V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A ++I+  T +NP+QV +DA+IN+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K
Sbjct:   39 ILLFGKWSYEDVVVRDPGLRRYICLKPV----ILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDLIYYKTGKNPLQVFIDAIINTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPK 186          

HSP 2 Score: 35.039 bits (79), Expect = 2.715e-35
Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  570 FVTSRTIAECLPDELINAAKGSSNSYAIQKKDEI 671
            F   + I ECL DE+I AA     SYA++K++E+
Sbjct:  182 FNNPKPIEECLADEIIAAAANDPKSYAVRKREEL 215          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.023e-34
Identity = 76/160 (47.50%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            ++KLF +W  E V V D SL  YI V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA ESA +N K   + LA
Sbjct:    2 EIKLFGKWDSETVAVKDPSLKSYISVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASESAHKNKKTVAQCLA 157          

HSP 2 Score: 33.113 bits (74), Expect = 1.023e-34
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  582 RTIAECLPDELINAAKGS-SNSYAIQKKDE 668
            +T+A+CL DELI A+K     S+A++KK+E
Sbjct:  150 KTVAQCLADELIFASKADMQKSFAVKKKEE 179          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.834e-34
Identity = 75/160 (46.88%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            ++KLF +W  E V V D SL  YI V        VPHTAGR + K F KA+  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N K   + LA
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASDSAHKNKKTVAQCLA 157          

HSP 2 Score: 32.3426 bits (72), Expect = 3.834e-34
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  582 RTIAECLPDELINAAKGS-SNSYAIQKKDE 668
            +T+A+CL DE+I A+K     S+A++KK+E
Sbjct:  150 KTVAQCLADEIIFASKADMQKSFAVRKKEE 179          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.994e-34
Identity = 74/160 (46.25%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N K   + LA
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLA 157          

HSP 2 Score: 32.3426 bits (72), Expect = 4.994e-34
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  582 RTIAECLPDELINAAKGS-SNSYAIQKKDE 668
            +T+A+CL DE+I A+K     S+A++KK+E
Sbjct:  150 KTVAQCLADEIIFASKADMQKSFAVRKKEE 179          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.994e-34
Identity = 74/160 (46.25%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N K   + LA
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVTPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLA 157          

HSP 2 Score: 32.3426 bits (72), Expect = 4.994e-34
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  582 RTIAECLPDELINAAKGS-SNSYAIQKKDE 668
            +T+A+CL DE+I A+K     S+A++KK+E
Sbjct:  150 KTVAQCLADEIIFASKADMQKSFAVRKKEE 179          
The following BLAST results are available for this feature:
BLAST of DY270368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_ENTHI7.450e-3762.3940S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS7_PYRIL1.930e-3650.0030S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_DESK12.521e-3648.3430S ribosomal protein S7P OS=Desulfurococcus kamch... [more]
RS7_METKA1.605e-3548.0530S ribosomal protein S7P OS=Methanopyrus kandleri... [more]
RS7_THENV2.085e-3548.0030S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_PYRAE2.715e-3546.7130S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS7_METMP1.023e-3447.5030S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM53.834e-3446.8830S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM74.994e-3446.2530S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM64.994e-3446.2530S ribosomal protein S7P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270368 ID=DY270368; Name=DY270368; organism=Citrus clementina; type=EST; length=1259bp
CAGCGAGCGGCCTTCGATTCTTATTATTTTATCTCTCTCGCTCTCTCACT
CTCTCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTATTGGCACAATCT
CAAGACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGAC
TTTCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCG
TGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTAC
TCAGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTAC
GAACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCG
TCAGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAG
AACCCAATTCAAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGA
AGATGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGG
ATATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACT
GGTGCTCGTGAATCTGCTTTTCGTAACATCAAGAACTATTGCCGAATGCT
TGCCCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCC
ATCCAGAAAAAGGATGAAATTTGAAAGAGTGGCAAAAGCCAATCCCTGAT
GACGTGAAAGTGGAAAAACAAATGTCAAAATTTTATTTTTAAAAAAAAAA
AAAACTTTTGGACAAATGTTTTTTTCTATTTAAATAATTTTTTTTAAACT
TTAAGAAAAAATAAAATTAAGGCTAAATTTAGATGCATCATTGCCTCTTA
TGTCAAGCGAGGTTACATCTATACTAACCCATTAACACAATACCAAAATT
ATCTAAACATTCTACAATCCACGAGCTGCCTTAATAACCCACACTCAATG
CAAACATTCTTACTAGGAATCCAAATCATACTAATAAAAGAACTTCTAAC
TCATTCTTTTTATTACTTTTTCTCAAAAATATAAACGATTTTTCACACCA
ATTTACATTTTTCGCCACTATCCTTAATATTCTCCCATTACAATTTGTTA
AATATTTATGAAAAAGAACCTACTAACAGACCAATCAATTTGCAATCTAT
TCACAATATGCTAATCGACATACCACCAATAGCATAAGAATATAACAATT
TAAGAGATACACAAACTAAATAAATGACATAAGAACCAACTTAGAAATAC
AAATAACTA
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