DY270368

Overview
NameDY270368
Unique NameDY270368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.717e-33
Identity = 77/153 (50.33%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIK 583
            D+K+F +W  + V++ D SL  YIG+       Y+PHT GR+  +RF KA+ PIVERL N++M  GRN GKK++A  IVK A +II L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD++P RRV+ A+  L  GA+E++F N K
Sbjct:   10 DLKVFGKWDTK-VEIRDPSLKKYIGLMPV----YLPHTGGRHEHRRFGKAKLPIVERLINNVMRPGRNKGKKMLAYNIVKTAFDIIALKTGQNPIQVLVKAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVMGAKEASFNNPK 157          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.929e-33
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            D+K+F +W  + V++ D SL  YI +       Y+PHT GR+  +RF KA+ PIVERL N +M  GRN GKK +A  IVK A +II+L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD+SP RR++ A+  + TGA++++F N K    +LA
Sbjct:    9 DIKVFGKWDTK-VEIRDPSLKKYISLMPV----YLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLA 163          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.826e-33
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIK 583
            ++K+F RW+ +DV V D  L +YI +       YVPHTAGRY+ ++F KA+  IVERL N +M    N GKKL A++IV++A EII   T QNPIQV+VDA+ N+GPRED TRI   G+V  Q+VD S LRR++ A+  +  GA  +A ++ K
Sbjct:    5 EIKVFGRWSTKDVVVKDPGLRNYINLTPI----YVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPREDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAAHKSKK 153          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.424e-32
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIK 583
            +VK+F +W  + V+V D SL  YI + +     Y+PHT GR+  +RF K++ PIVERL N+LM  GRN GKK++A  IVK   +II + T QNPIQV+V A+ N+ PRE+ TRI   G+V   AVD++P RRV+ A+  L TGA E++F N K
Sbjct:   11 NVKVFGKWDTK-VEVRDPSLKKYIDLMSI----YLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFNNPK 158          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.663e-31
Identity = 63/150 (42.00%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  128 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRN 577
            + LF +W   DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN GKK  A +I+K A +II++ T +NP+QV VDAV+N  PRE+ TR+   G+    +VD+ P RR++ AI  +  GAR  +F N
Sbjct:   40 ILLFGKWNVNDVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYVATGKNPVQVFVDAVVNVAPREEITRVIYGGIAYPVSVDVGPTRRLDLAIRWIAEGARACSFNN 185          

HSP 2 Score: 33.4982 bits (75), Expect = 1.663e-31
Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  570 FVTSRTIAECLPDELINAAKGSSNSYAIQKKDEI 671
            F   R I ECL +E+I AA     SYA++++DE+
Sbjct:  183 FNNPRPIEECLANEIIAAANNDPASYALRRRDEM 216          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.959e-30
Identity = 71/171 (41.52%), Postives = 103/171 (60.23%), Query Frame = 2
Query:   92 AQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            A+S+D  +   + KLF +W   ++   D S   Y+ V      T V HT GR++ K+F+K++  IVERL N LM  G N GKK  A++IV+ A +I+H  TD+NPIQV+V AV N+ PRE+  R+   G+   QAVD +P RRV+QA+  L  GA  ++F+   +    LA
Sbjct:   16 AESEDTQEVAANAKLFGKWDVAEIHYEDPSTRRYLAV------TPVAHTMGRHAQKQFKKSEISIVERLANRLMKTGANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAEALA 180          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_META3 (30S ribosomal protein S7P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps7p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.505e-29
Identity = 68/160 (42.50%), Postives = 103/160 (64.38%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            ++KLFN+W   ++ V D SL  YI ++      +VPHT+GR S + F KA+  IVERL N+LM   +N G+K + + IV+ A EII   T++NP++V+V+A+ N GPRE+ TRI   G+   Q+VD+SP RR++ A+  +  G   SA +N K+  + LA
Sbjct:    2 EIKLFNKWDTTEIVVKDPSLRHYINLEPI----FVPHTSGRNSGRMFEKAKMNIVERLVNNLMRAEQNTGQKQVTLSIVEEAFEIIEKRTNENPVKVLVEALENGGPREETTRISYGGIAFLQSVDVSPSRRLDTALRNIAIGTLNSAHKNKKSAAQCLA 157          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.505e-29
Identity = 75/177 (42.37%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  110 SQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM------------MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            S P   +KLF RW+++D+++ + +L + I ++      Y+PHT GR+  K+F K + PIVERL N LM            ++ +N GKKL A+R VK+A EII L T +NPIQV +DA+ NS  RE+ TRI   GV    AVD SP R V+ AI  +  GA   AFR+ ++    LA
Sbjct:    5 SNPETQIKLFGRWSYDDLRIENAALKNVISLKPV----YLPHTGGRHEHKKFGKLEIPIVERLVNRLMGQAMNSGSRKDHVNSKNQGKKLKAMRTVKYAFEIIELRTGKNPIQVFLDAIENSIIREEVTRIMYGGVSYFHAVDTSPSRMVDLAIRHIAQGAAMKAFRSPRSLAEALA 177          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_METST (30S ribosomal protein S7P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps7p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.965e-29
Identity = 71/158 (44.94%), Postives = 103/158 (65.19%), Query Frame = 2
Query:  131 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            KLF++W   +V V D+ L +Y+ +        VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A  IV+ A+EII+  T QNP+QV+V AV N+ PRE+ TRI   G+  + AVDI+P RRV+ ++  +T GA +SAF+N K+  + LA
Sbjct:    4 KLFDKWDVTEVTVEDMGLQNYVCLDEI----VVPHTMGRHVKRQFAKSKVSIVERLMNKIMRTERNSGKKNKAYSIVEDALEIINNKTKQNPVQVLVKAVENTAPREETTRIKYGGIGYQIAVDIAPQRRVDLSLGFITKGAMQSAFKNKKSAAQCLA 157          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_METTH (30S ribosomal protein S7P OS=Methanobacterium thermoautotrophicum GN=rps7p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.467e-29
Identity = 68/157 (43.31%), Postives = 104/157 (66.24%), Query Frame = 2
Query:  134 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            +F++W  ++V+V D+ L+ YI + +      VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A +IV+ A EII+  T +NP+Q++V AV N+ PRE+ TRI   G+  + AVDISP RRV+ ++  +T GA ++AF+N K+    LA
Sbjct:    4 VFDKWELDEVKVEDMGLAKYICLDSI----LVPHTMGRHVKRQFAKSKVSIVERLINKVMRTERNSGKKNKAYKIVQEAFEIINRRTKENPVQILVKAVENTSPREETTRIKYGGIGYQVAVDISPQRRVDLSLGFITRGAMQAAFKNKKSIEECLA 156          
The following BLAST results are available for this feature:
BLAST of DY270368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_SULTO1.717e-3350.3330S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_SULSO2.929e-3348.1330S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_METJA3.826e-3349.0230S ribosomal protein S7P OS=Methanocaldococcus ja... [more]
RS7_SULAC9.424e-3249.0230S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]
RS7_CALMQ1.663e-3142.0030S ribosomal protein S7P OS=Caldivirga maquilinge... [more]
RS7_HALSA3.959e-3041.5230S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_META31.505e-2942.5030S ribosomal protein S7P OS=Methanococcus aeolicu... [more]
RS7_KORCO1.505e-2942.3730S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]
RS7_METST1.965e-2944.9430S ribosomal protein S7P OS=Methanosphaera stadtm... [more]
RS7_METTH7.467e-2943.3130S ribosomal protein S7P OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270368 ID=DY270368; Name=DY270368; organism=Citrus clementina; type=EST; length=1259bp
CAGCGAGCGGCCTTCGATTCTTATTATTTTATCTCTCTCGCTCTCTCACT
CTCTCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTATTGGCACAATCT
CAAGACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGAC
TTTCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCG
TGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTAC
TCAGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTAC
GAACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCG
TCAGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAG
AACCCAATTCAAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGA
AGATGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGG
ATATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACT
GGTGCTCGTGAATCTGCTTTTCGTAACATCAAGAACTATTGCCGAATGCT
TGCCCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCC
ATCCAGAAAAAGGATGAAATTTGAAAGAGTGGCAAAAGCCAATCCCTGAT
GACGTGAAAGTGGAAAAACAAATGTCAAAATTTTATTTTTAAAAAAAAAA
AAAACTTTTGGACAAATGTTTTTTTCTATTTAAATAATTTTTTTTAAACT
TTAAGAAAAAATAAAATTAAGGCTAAATTTAGATGCATCATTGCCTCTTA
TGTCAAGCGAGGTTACATCTATACTAACCCATTAACACAATACCAAAATT
ATCTAAACATTCTACAATCCACGAGCTGCCTTAATAACCCACACTCAATG
CAAACATTCTTACTAGGAATCCAAATCATACTAATAAAAGAACTTCTAAC
TCATTCTTTTTATTACTTTTTCTCAAAAATATAAACGATTTTTCACACCA
ATTTACATTTTTCGCCACTATCCTTAATATTCTCCCATTACAATTTGTTA
AATATTTATGAAAAAGAACCTACTAACAGACCAATCAATTTGCAATCTAT
TCACAATATGCTAATCGACATACCACCAATAGCATAAGAATATAACAATT
TAAGAGATACACAAACTAAATAAATGACATAAGAACCAACTTAGAAATAC
AAATAACTA
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