DY270368

Overview
NameDY270368
Unique NameDY270368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.835e-25
Identity = 70/179 (39.11%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  116 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ A+  +  GA    +R   ++   LA
Sbjct:   15 PH-EIKVMGRWSTEDVEVKDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALA 188          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.835e-25
Identity = 60/148 (40.54%), Postives = 90/148 (60.81%), Query Frame = 2
Query:  131 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFR 574
            +LF  W   +++ +D S   YI V      T + HT GR+S K+F+K++  IVERL N LM    N GKK  A +IV+ A +I+   TD+NP+QV+V AV N+GPRE+  R+   G+   +AVD++P RRV+ A+  +  G    +F+
Sbjct:   22 QLFGEWEIGEIEYDDPSTRRYITV------TPIAHTMGRHSEKQFKKSEISIVERLINRLMQTDENTGKKQQATKIVREAFDIVAERTDENPVQVLVTAVENAGPREETVRLKYGGISVPKAVDVAPQRRVDLALKFIAEGTYNDSFK 163          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.009e-25
Identity = 69/179 (38.55%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  116 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +R   ++   LA
Sbjct:   12 PH-EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALA 185          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.246e-24
Identity = 58/161 (36.02%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  125 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLAR 607
            + KLF  W   +++  D S   YI V      T + HT GR++ K+F K++  +VERL N LM    N G K   + IV+ A + IH  T++NP+QV+V  V N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G +  ++++ ++    LA+
Sbjct:   44 NAKLFGEWDVSEIEYEDPSTQRYITV------TPIAHTMGRHAAKQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIADGTQRGSYKSAQSAADSLAQ 198          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.234e-23
Identity = 59/157 (37.58%), Postives = 96/157 (61.15%), Query Frame = 2
Query:  134 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            LFN++    V+++D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+    LA
Sbjct:    2 LFNKYDVNAVEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLA 154          
BLAST of DY270368 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.611e-23
Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 2
Query:  134 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKNYCRMLA 604
            LF+++    V+V+D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+    LA
Sbjct:    2 LFDKYDVNSVEVHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLA 154          
The following BLAST results are available for this feature:
BLAST of DY270368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_PYRHO3.835e-2539.1130S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]
RS7_NATPD3.835e-2540.5430S ribosomal protein S7P OS=Natronomonas pharaoni... [more]
RS7_PYRAB5.009e-2538.5530S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_HALWD3.246e-2436.0230S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_THEAC1.234e-2337.5830S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_THEVO1.611e-2338.2230S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270368 ID=DY270368; Name=DY270368; organism=Citrus clementina; type=EST; length=1259bp
CAGCGAGCGGCCTTCGATTCTTATTATTTTATCTCTCTCGCTCTCTCACT
CTCTCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTATTGGCACAATCT
CAAGACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGAC
TTTCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCG
TGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTAC
TCAGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTAC
GAACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCG
TCAGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAG
AACCCAATTCAAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGA
AGATGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGG
ATATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACT
GGTGCTCGTGAATCTGCTTTTCGTAACATCAAGAACTATTGCCGAATGCT
TGCCCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCC
ATCCAGAAAAAGGATGAAATTTGAAAGAGTGGCAAAAGCCAATCCCTGAT
GACGTGAAAGTGGAAAAACAAATGTCAAAATTTTATTTTTAAAAAAAAAA
AAAACTTTTGGACAAATGTTTTTTTCTATTTAAATAATTTTTTTTAAACT
TTAAGAAAAAATAAAATTAAGGCTAAATTTAGATGCATCATTGCCTCTTA
TGTCAAGCGAGGTTACATCTATACTAACCCATTAACACAATACCAAAATT
ATCTAAACATTCTACAATCCACGAGCTGCCTTAATAACCCACACTCAATG
CAAACATTCTTACTAGGAATCCAAATCATACTAATAAAAGAACTTCTAAC
TCATTCTTTTTATTACTTTTTCTCAAAAATATAAACGATTTTTCACACCA
ATTTACATTTTTCGCCACTATCCTTAATATTCTCCCATTACAATTTGTTA
AATATTTATGAAAAAGAACCTACTAACAGACCAATCAATTTGCAATCTAT
TCACAATATGCTAATCGACATACCACCAATAGCATAAGAATATAACAATT
TAAGAGATACACAAACTAAATAAATGACATAAGAACCAACTTAGAAATAC
AAATAACTA
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