DY270378
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEF5 (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rraA PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 9.968e-29 Identity = 63/127 (49.61%), Postives = 89/127 (70.08%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466 T + CD+ L+ +V++P+F +G SF G +VT+K FEDN LV+E +E +G+GKVLV+DGGGS+R AL+G L + A NGW G+V+ GCI DVD I +GV+AL SHP+K++K+G GD Sbjct: 6 TPDLCDAYPDLV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVELKGQGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPMKTDKRGIGD 127
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_LARHH (Regulator of ribonuclease activity A OS=Laribacter hongkongensis (strain HLHK9) GN=rraA PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 9.968e-29 Identity = 68/128 (53.12%), Postives = 84/128 (65.62%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDK 469 TA+ CD S L++L P + +G F+G + TLKVFEDN VRE+L GEG+VLV+DGGGS RCALVG LG LA NGW+GIVV GCI D + +GVRAL +HPLKS K G G++ Sbjct: 5 TADLCDE-----FSDRLQILAPGYASFGGHARFAGRIATLKVFEDNSRVREMLSEPGEGRVLVVDGGGSRRCALVGDQLGALAVRNGWAGIVVYGCIRDSVALGLLPLGVRALATHPLKSVKNGVGER 127
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEAE (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa GN=rraA PE=1 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.700e-28 Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466 T + CD+ L+ +V++P+F +G SF G +VT+K FEDN LV+E ++ G+GKVLV+DGGGS+R AL+G L + A NGW GIVV GCI DVD I +GV+AL SHPLK++K+G GD Sbjct: 5 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGD 126
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEAB (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rraA PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.700e-28 Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466 T + CD+ L+ +V++P+F +G SF G +VT+K FEDN LV+E ++ G+GKVLV+DGGGS+R AL+G L + A NGW GIVV GCI DVD I +GV+AL SHPLK++K+G GD Sbjct: 5 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGD 126
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEA8 (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa (strain LESB58) GN=rraA PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.700e-28 Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466 T + CD+ L+ +V++P+F +G SF G +VT+K FEDN LV+E ++ G+GKVLV+DGGGS+R AL+G L + A NGW GIVV GCI DVD I +GV+AL SHPLK++K+G GD Sbjct: 5 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGD 126
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_AZOVD (Regulator of ribonuclease activity A OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rraA PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 2.900e-28 Identity = 63/131 (48.09%), Postives = 90/131 (68.70%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478 T + CD+ L+ +V++P+F +G SF G +VT+K FEDN LV++ ++T G+GKVLV+DGGGS+R AL+G L + A NGW G+VV GCI DVD I +GV+AL +HP+K++K+G GD P Sbjct: 5 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKDQVDTDGKGKVLVVDGGGSLRRALLGDMLAEKAARNGWEGLVVYGCIRDVDVIAQTDLGVQALATHPMKTDKRGIGDLNVP 130
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPK (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain KT2440) GN=rraA PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.788e-28 Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466 T + CD+ L+ +VL+P+F +G SF G +VT+K FEDN LV+E +E G+GKVLV+DGGGS+R AL+G L + A NGW G+V+ GC+ DVD + +GV+AL SHP+K++K+G GD Sbjct: 6 TPDLCDAYPDLV-----QVLEPMFSNFGGRDSFGGQIVTIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGD 127
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPG (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain GB-1) GN=rraA PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.788e-28 Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466 T + CD+ L+ +VL+P+F +G SF G +VT+K FEDN LV+E +E G+GKVLV+DGGGS+R AL+G L + A NGW G+V+ GC+ DVD + +GV+AL SHP+K++K+G GD Sbjct: 6 TPDLCDAYPDLV-----QVLEPMFSNFGGRDSFGGQIVTIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGD 127
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEP1 (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rraA PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.788e-28 Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466 T + CD+ L+ +VL+P+F +G SF G +VT+K FEDN LV+E +E G+GKVLV+DGGGS+R AL+G L + A NGW G+V+ GC+ DVD + +GV+AL SHP+K++K+G GD Sbjct: 6 TPDLCDAYPDLV-----QVLEPMFSNFGGRDSFGGQIVTIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGD 127
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEMY (Regulator of ribonuclease activity A OS=Pseudomonas mendocina (strain ymp) GN=rraA PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.788e-28 Identity = 65/131 (49.62%), Postives = 89/131 (67.94%), Query Frame = 2 Query: 86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478 T + CD+ L+ +V++P+F YG SF G +VT+K EDN LV+E ++ GEG+VLV+DGGGS+R AL+G L + A NGW+GIVV GCI DVD I +GV+AL SHP+K++K+G GD P Sbjct: 5 TPDLCDAYPELV-----QVVEPMFANYGGRDSFGGQMVTIKCHEDNSLVKEQVDLPGEGRVLVVDGGGSLRRALLGDMLAEKAAKNGWAGIVVYGCIRDVDVIAQADLGVQALASHPMKTDKRGIGDLNVP 130 The following BLAST results are available for this feature:
BLAST of DY270378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 185
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Sequences
The
following sequences are available for this feature:
EST sequence >DY270378 ID=DY270378; Name=DY270378; organism=Citrus clementina; type=EST; length=1053bpback to top |