DY270378

Overview
NameDY270378
Unique NameDY270378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1053
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEF5 (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.968e-29
Identity = 63/127 (49.61%), Postives = 89/127 (70.08%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466
            T + CD+   L+     +V++P+F  +G   SF G +VT+K FEDN LV+E +E +G+GKVLV+DGGGS+R AL+G  L + A  NGW G+V+ GCI DVD I    +GV+AL SHP+K++K+G GD
Sbjct:    6 TPDLCDAYPDLV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVELKGQGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPMKTDKRGIGD 127          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_LARHH (Regulator of ribonuclease activity A OS=Laribacter hongkongensis (strain HLHK9) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.968e-29
Identity = 68/128 (53.12%), Postives = 84/128 (65.62%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDK 469
            TA+ CD       S  L++L P +  +G    F+G + TLKVFEDN  VRE+L   GEG+VLV+DGGGS RCALVG  LG LA  NGW+GIVV GCI D   +    +GVRAL +HPLKS K G G++
Sbjct:    5 TADLCDE-----FSDRLQILAPGYASFGGHARFAGRIATLKVFEDNSRVREMLSEPGEGRVLVVDGGGSRRCALVGDQLGALAVRNGWAGIVVYGCIRDSVALGLLPLGVRALATHPLKSVKNGVGER 127          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEAE (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa GN=rraA PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.700e-28
Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466
            T + CD+   L+     +V++P+F  +G   SF G +VT+K FEDN LV+E ++  G+GKVLV+DGGGS+R AL+G  L + A  NGW GIVV GCI DVD I    +GV+AL SHPLK++K+G GD
Sbjct:    5 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGD 126          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEAB (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.700e-28
Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466
            T + CD+   L+     +V++P+F  +G   SF G +VT+K FEDN LV+E ++  G+GKVLV+DGGGS+R AL+G  L + A  NGW GIVV GCI DVD I    +GV+AL SHPLK++K+G GD
Sbjct:    5 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGD 126          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEA8 (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa (strain LESB58) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.700e-28
Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466
            T + CD+   L+     +V++P+F  +G   SF G +VT+K FEDN LV+E ++  G+GKVLV+DGGGS+R AL+G  L + A  NGW GIVV GCI DVD I    +GV+AL SHPLK++K+G GD
Sbjct:    5 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGD 126          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_AZOVD (Regulator of ribonuclease activity A OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rraA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.900e-28
Identity = 63/131 (48.09%), Postives = 90/131 (68.70%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            T + CD+   L+     +V++P+F  +G   SF G +VT+K FEDN LV++ ++T G+GKVLV+DGGGS+R AL+G  L + A  NGW G+VV GCI DVD I    +GV+AL +HP+K++K+G GD   P
Sbjct:    5 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKDQVDTDGKGKVLVVDGGGSLRRALLGDMLAEKAARNGWEGLVVYGCIRDVDVIAQTDLGVQALATHPMKTDKRGIGDLNVP 130          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPK (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain KT2440) GN=rraA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.788e-28
Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466
            T + CD+   L+     +VL+P+F  +G   SF G +VT+K FEDN LV+E +E  G+GKVLV+DGGGS+R AL+G  L + A  NGW G+V+ GC+ DVD +    +GV+AL SHP+K++K+G GD
Sbjct:    6 TPDLCDAYPDLV-----QVLEPMFSNFGGRDSFGGQIVTIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGD 127          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPG (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain GB-1) GN=rraA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.788e-28
Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466
            T + CD+   L+     +VL+P+F  +G   SF G +VT+K FEDN LV+E +E  G+GKVLV+DGGGS+R AL+G  L + A  NGW G+V+ GC+ DVD +    +GV+AL SHP+K++K+G GD
Sbjct:    6 TPDLCDAYPDLV-----QVLEPMFSNFGGRDSFGGQIVTIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGD 127          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEP1 (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rraA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.788e-28
Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGD 466
            T + CD+   L+     +VL+P+F  +G   SF G +VT+K FEDN LV+E +E  G+GKVLV+DGGGS+R AL+G  L + A  NGW G+V+ GC+ DVD +    +GV+AL SHP+K++K+G GD
Sbjct:    6 TPDLCDAYPDLV-----QVLEPMFSNFGGRDSFGGQIVTIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGD 127          
BLAST of DY270378 vs. ExPASy Swiss-Prot
Match: RRAA_PSEMY (Regulator of ribonuclease activity A OS=Pseudomonas mendocina (strain ymp) GN=rraA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.788e-28
Identity = 65/131 (49.62%), Postives = 89/131 (67.94%), Query Frame = 2
Query:   86 TAEACDSNAALLASGDLRVLQPVFQIYGQCRSFSGPVVTLKVFEDNVLVRELLETRGEGKVLVIDGGGSMRCALVGGNLGQLAHNNGWSGIVVNGCITDVDDINGCGIGVRALGSHPLKSNKKGHGDKLAP 478
            T + CD+   L+     +V++P+F  YG   SF G +VT+K  EDN LV+E ++  GEG+VLV+DGGGS+R AL+G  L + A  NGW+GIVV GCI DVD I    +GV+AL SHP+K++K+G GD   P
Sbjct:    5 TPDLCDAYPELV-----QVVEPMFANYGGRDSFGGQMVTIKCHEDNSLVKEQVDLPGEGRVLVVDGGGSLRRALLGDMLAEKAAKNGWAGIVVYGCIRDVDVIAQADLGVQALASHPMKTDKRGIGDLNVP 130          
The following BLAST results are available for this feature:
BLAST of DY270378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_PSEF59.968e-2949.61Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_LARHH9.968e-2953.13Regulator of ribonuclease activity A OS=Laribacter... [more]
RRAA_PSEAE1.700e-2851.18Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEAB1.700e-2851.18Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEA81.700e-2851.18Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_AZOVD2.900e-2848.09Regulator of ribonuclease activity A OS=Azotobacte... [more]
RRAA_PSEPK3.788e-2848.82Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEPG3.788e-2848.82Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEP13.788e-2848.82Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEMY3.788e-2849.62Regulator of ribonuclease activity A OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270378 ID=DY270378; Name=DY270378; organism=Citrus clementina; type=EST; length=1053bp
TATAGTTTCACTCTTTCATTTTTCCATAATCTGGGAATTCTCTCTAAAGC
TTGCTCAAGGACGCCATATGGCTGGGGTGGTAGCAACTGCTGAAGCTTGT
GACTCAAATGCAGCTCTTCTGGCAAGTGGTGACTTGCGCGTTCTGCAACC
GGTCTTCCAGATCTATGGCCAATGTCGGTCATTCTCTGGTCCAGTTGTCA
CCCTGAAGGTGTTTGAGGACAATGTTTTGGTTAGAGAGCTGCTTGAAACC
AGAGGTGAAGGGAAAGTCCTAGTTATAGACGGTGGGGGAAGCATGAGGTG
TGCTCTGGTAGGCGGCAATTTGGGACAATTGGCGCATAATAATGGATGGT
CGGGCATTGTGGTGAATGGATGCATTACAGATGTAGATGACATCAATGGA
TGTGGTATTGGCGTGAGAGCCCTGGGATCCCATCCTTTGAAATCGAACAA
GAAGGGCCATGGTGACAAGCTAGCTCCCTGTGTACATTGCCAGCATATTC
ATTGTCAGATCATTTAATCATAAATAGCGAAAACCATTTTCACAAGCAAA
CTTTCAACTTATCTGTACTCACAACAACAACAACAAACACACCAAAGAAA
CAACACAACCACCCACTATTCCTCCCTTCATAATGACAACCCAAACCCAC
ATGGGAACCCGAATAAATAACCGCACTCCCCCACAACCCCCCCAACATAA
CAACACCTTTTCACAACTTACATACTATCGACATTCGAAATTCACTCTCA
CACCCCACATCCAACCCTAAAAACAACCCCAATAGCAAATACCCCCAAAA
TTAAACATATAACAACAAACATACATCCCAGCTATACCCCAAGTTTCTAT
AAACAACAAGTGCTTTTACCTCTTTCTTACAATATAAAAAAATAATTACA
ATATCTTATAAAGAAATTATTAACTACACTCAAAACAAAACTAAACCATA
AATAATCAAAAACAACCATTCAAAAACCCCAAACCTCATCACAACACCCA
AGCTACACTAAACCAAACCTACCGGAAATAACCCTCCCGACTAGACTAAA
TCC
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