DY270379
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2) HSP 1 Score: 323.553 bits (828), Expect = 1.125e-87 Identity = 164/312 (52.56%), Postives = 221/312 (70.83%), Query Frame = 2 Query: 35 RSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG-KIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQ 967 + K SIQ RRSLP+F + EL+ A+ ++QVLI+ GETGSGKTTQ+ QYL E GYT KG KI CTQPRRVAA SVA RVA E G +LG EVGY+IRFEDCT T+++YMTDGMLLRE L + +L+ YSV+M+DEAHERT++TD+LFGL+K + + RP+L+++V SAT+D RFS +F + +F IPGR FPVDI Y++ DYL++ +++VLQIHV +P GDIL FLTG EEI+ CE L ++ + LG + E+ VL + LP+++ + I P G K + + T G +L+PGF +Q Sbjct: 387 QQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQAR-IFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQ 697
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2) HSP 1 Score: 314.694 bits (805), Expect = 5.227e-85 Identity = 162/308 (52.60%), Postives = 219/308 (71.10%), Query Frame = 2 Query: 41 KLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQ 964 K SI EQR+ LPIF ++ EL+ + DN ++I++GETGSGKTTQL QYL E GYT G IGCTQPRRVAA SVAKRV+EE G LGEEVGYAIRFEDCT +TLIKYMTDG+LLRE L + +L YS I++DEAHER++NTDVLFGLL+++V RR DL+LIVTSAT+DAE+F+ +F N IF IPGRTFPVDI +S+ DY+++A+ LQ+H+ GDIL F+ G E+I+ + + E ++ L ++ P + VL + LP+++ K I + P G K + + T +G +++ G+ + Sbjct: 522 KKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAK-IFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCK 827
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1) HSP 1 Score: 314.309 bits (804), Expect = 6.826e-85 Identity = 162/308 (52.60%), Postives = 218/308 (70.78%), Query Frame = 2 Query: 41 KLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQ 964 K SI EQR+ LPIF ++ EL+ + DN ++I++GETGSGKTTQL QYL E GYT G IGCTQPRRVAA SVAKRV+EE G LGEEVGYAIRFEDCT TLIKYMTDG+LLRE L + +L YS I++DEAHER++NTDVLFGLL+++V RR DL+LIVTSAT+DAE+F+ +F N IF IPGRTFPVDI +S+ DY+++A+ LQ+H+ GDIL F+ G E+I+ + + E ++ L ++ P + VL + LP+++ K I + P G K + + T +G +++ G+ + Sbjct: 522 KKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAK-IFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCK 827
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2) HSP 1 Score: 311.997 bits (798), Expect = 3.388e-84 Identity = 155/309 (50.16%), Postives = 221/309 (71.52%), Query Frame = 2 Query: 47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 S +EQR LP F ++ +L+ + DNQVLI++GETGSGKTTQLAQ+L E GY G IGCTQPRRVAA SVAKRV+EE G RLG VGY+IRFED TGPDT+IKYMTDG+LLRE L+ NL +YSVI++DEAHER++NTD+L GLLK+++ RR D++L+VTSAT+++++FS +F F+IPGRT+PVDI +++ +DY+++A+ VLQIH+ +P GDIL F+TG E+I+ CE + +++ L D P + +L + +P ++ K I + G K + + T +G +++ G+ + M Sbjct: 484 SYREQREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCSDYVEAAVRQVLQIHLSQPAGDILVFMTGQEDIEATCEIIADRLNQL-HDAPRLSILPIYSQMPADLQAK-IFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKM 790
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2) HSP 1 Score: 311.997 bits (798), Expect = 3.388e-84 Identity = 156/311 (50.16%), Postives = 226/311 (72.67%), Query Frame = 2 Query: 47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKG--KIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 S++ R+SLP+++ K++L++A+++ QVL+++ ETGSGKTTQL Q+L EAGYT KG KI CTQPRRVAA SVA RVA+E RLG+EVGY+IRFE+ T T+IKY+TDGMLLRE L + +L+ YSVI++DEAHERT++TD+LFGL+K + + RPDL+++++SAT+DAE+FS YF +F +PGR +PVDI Y+ Q +Y+ +A+ T+LQIH +P GDIL FLTG +EI+ E++ E + LGK +PE+ + + LP+E+ K I + P G K + + T +G +++ GF +QNM Sbjct: 410 SLESSRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYT-KGNKKICCTQPRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPEANYIQAAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELCRILGKRIPEIILCPIYANLPSELQAK-IFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFVKQNM 718
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2) HSP 1 Score: 311.227 bits (796), Expect = 5.779e-84 Identity = 156/310 (50.32%), Postives = 221/310 (71.29%), Query Frame = 2 Query: 47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYF-FNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 SI++QR LP+F + +++ + +N V+I++GETGSGKTTQLAQYL E G+ G IGCTQPRRVAA SVA+RVA+E G LG++VGYAIRFEDCT T+IKYMTDG+LLRE L D +L QYS I++DEAHER++NTDVLFGLL++++ +R DL+LIVTSAT+DA++F+ +F NC F+IPGRTFPV++ ++R V DY+D+A+ + IH+ +GDIL F+ G E+I+ CE + EK+ L + P + VL + LP+++ K I R P G K + + T +G +++PGF + + Sbjct: 433 SIKQQREYLPVFACRQKMMNVIRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRADLKLIVTSATMDADKFADFFGGNCPTFTIPGRTFPVELFHARTPVEDYVDAAVKQAVTIHLGGMDGDILIFMPGQEDIECTCEMIKEKLGEL-DEAPPLAVLPIYSQLPSDLQAK-IFQRAPGGMRKAIVATNIAETSLTVDGILFVIDPGFCKMKV 740
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1) HSP 1 Score: 292.738 bits (748), Expect = 2.127e-78 Identity = 158/321 (49.22%), Postives = 214/321 (66.67%), Query Frame = 2 Query: 50 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLA--EAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMG------VLTV*RALPNEISTKNILNRPPRG-----GEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 I E RR LP+++ + E ++ H+NQ+++ +GETGSGKTTQ+ Q++ E + T +I CTQPRRVAA SVAKRVA+E LGEEVGY IRFEDC+GP+TL+KYMTDGMLLRE + D LS+YS I+LDEAHERT+ TD+L GL+K+L RRPDL++IV SATLDA++F YFF+ + ++PGRT+PV+I Y+++ DYL++AL TVLQIHV+E GDIL FLTG EEI E C KI D+ G V + +LP + I P G K + + T +G +++PGF++Q + Sbjct: 68 ILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGDILVFLTGEEEI----EDACRKITLEADDLVREGAAGPLKVYPLYGSLPPN-QQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKI 383
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 6.188e-78 Identity = 158/313 (50.48%), Postives = 214/313 (68.37%), Query Frame = 2 Query: 44 LSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGK--IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD-TLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEP-EGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQN 970 L+IQE R+ LP+ + K+EL+Q + NQVLI++GETGSGKTTQL QYL E G+T +GK I TQPRRVAATSVA RVA+E LG+EVGY IRFED T P+ T++KYMTDGMLLRE L D LS+YS IM+DEAHERT+ TD+L GLLK ++ +RP L+L+++SAT++A++FS +F NC IF++PGR +PVDI+Y+ Q +Y+ +A+ T+ QIH + GDIL FLTG EEI+ L E + LG +M + + LP E K I P K + + T +G +++PGF ++N Sbjct: 214 LTIQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQIAITQPRRVAATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDSKLSKYSCIMIDEAHERTLATDILIGLLKDILPQRPTLKLLISSATMNAKKFSEFFDNCPIFNVPGRRYPVDIHYTLQPEANYIHAAITTIFQIHTTQSLPGDILVFLTGQEEIERTKTKLEEIMSKLGSRTKQMIITPIYANLPQEQQLK-IFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGFVKEN 525
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1) HSP 1 Score: 286.189 bits (731), Expect = 1.991e-76 Identity = 150/320 (46.88%), Postives = 214/320 (66.88%), Query Frame = 2 Query: 50 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEA---GYTTKGK---IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNI------LNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 I E+RR LP++ K++ + ++ NQ LIL+GETGSGKTTQ+ Q++ +A + KG+ +GCTQPRRVAA SV++RVA+E +GEEVGY+IRFEDCT T++KY+TDGMLLRE + D L +Y VI+LDEAHERT+ TDVLFGLLK++++ RPDL+L+V SATL+AE+F YF + +PGR PV+I Y+++ DYL++A+ TV+QIH+ EP GDIL FLTG EEI+ C + +++ LG V + V+ + LP + K L G K + + T +G +++PGFA+Q + Sbjct: 58 ILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKV 377
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 1.092e-74 Identity = 153/320 (47.81%), Postives = 213/320 (66.56%), Query Frame = 2 Query: 11 PKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGK-IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQ 967 PK TF +R I E+R+ LP++K K + I+ + +NQV+IL+GETGSGKTTQ+ Q++ +AG GK +G TQPRRVAA SVAKRV+EE LGEEVGY+IRFE+ + T +KY+TDGMLLRE + D L++Y VI+LDEAHERT++TD+LFGL+K ++KRR DL+LIV SATL+A +F YF N + +PGR PV+I Y+ + DYL+SA+ TV+ IH +E GDIL FLTG EEI+ C + + + G +P M L + +LP +K R K + + T +G +++PGF++Q Sbjct: 58 PKKETFSKRY-YEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTDGMLLRESMSDPTLNKYDVIILDEAHERTLSTDILFGLIKDILKRRKDLKLIVMSATLEAGKFQKYFENAPLIKVPGRLHPVEIFYTEEAAKDYLESAVRTVIDIHTNEGTGDILVFLTGEEEIEDTCAKIQRETRERG--LPPMKTLPLYSSLPIYQQSKIFDTCKER---KCIVSTNIAETSLTIDGIVFVVDPGFSKQ 371 The following BLAST results are available for this feature:
BLAST of DY270379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY270379 ID=DY270379; Name=DY270379; organism=Citrus clementina; type=EST; length=983bpback to top |