DY270379
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX15_PONAB (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2) HSP 1 Score: 272.322 bits (695), Expect = 2.975e-72 Identity = 144/317 (45.43%), Postives = 211/317 (66.56%), Query Frame = 2 Query: 50 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGK---IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHV-DEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRG-----GEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 I ++R LP+++ K+ + +Q +L+GETGSGKTTQ+ Q+ E + G + CTQPRRVAA SVA+RVA+E LG+EVGY+IRFEDC+ T++KYMTDGMLLRE + D L +Y VI+LDEAHERT+ TD+L G+LK++V++R DL++IV SATLDA +F YF NC + +IPGRT PV+I Y+ + DYL++A+ TV+QIH+ +E EGD+L FLTG EEID C+ + ++ LG +V ++ ++ + LP + + PP+ G K + + T +G +++PGFA+Q + Sbjct: 130 ILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKV 446
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2) HSP 1 Score: 272.322 bits (695), Expect = 2.975e-72 Identity = 144/317 (45.43%), Postives = 211/317 (66.56%), Query Frame = 2 Query: 50 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGK---IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHV-DEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRG-----GEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 I ++R LP+++ K+ + +Q +L+GETGSGKTTQ+ Q+ E + G + CTQPRRVAA SVA+RVA+E LG+EVGY+IRFEDC+ T++KYMTDGMLLRE + D L +Y VI+LDEAHERT+ TD+L G+LK++V++R DL++IV SATLDA +F YF NC + +IPGRT PV+I Y+ + DYL++A+ TV+QIH+ +E EGD+L FLTG EEID C+ + ++ LG +V ++ ++ + LP + + PP+ G K + + T +G +++PGFA+Q + Sbjct: 130 ILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKV 446
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2) HSP 1 Score: 272.322 bits (695), Expect = 2.975e-72 Identity = 144/317 (45.43%), Postives = 211/317 (66.56%), Query Frame = 2 Query: 50 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGK---IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHV-DEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRG-----GEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 I ++R LP+++ K+ + +Q +L+GETGSGKTTQ+ Q+ E + G + CTQPRRVAA SVA+RVA+E LG+EVGY+IRFEDC+ T++KYMTDGMLLRE + D L +Y VI+LDEAHERT+ TD+L G+LK++V++R DL++IV SATLDA +F YF NC + +IPGRT PV+I Y+ + DYL++A+ TV+QIH+ +E EGD+L FLTG EEID C+ + ++ LG +V ++ ++ + LP + + PP+ G K + + T +G +++PGFA+Q + Sbjct: 130 ILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKV 446
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 3.885e-72 Identity = 150/321 (46.73%), Postives = 212/321 (66.04%), Query Frame = 2 Query: 44 LSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKI-GCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP-DTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYF----------FNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKD--VPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQ 964 LSI++QR+ LP+FKL+N ++ + + Q ++++GETG GK+TQ+ QYLAEAG+T +G++ G TQPRRVAA +VA RVAEE G LG EVGY IRF+DCT T IK++TDGML+RE+++D L++YSVIMLDEAHERT+ TD+ GLLK++ K+R DLRLIV SATLDA++F +F C I ++ GRTFPVDI Y + V DY+ S + TV++IH E +GDIL+FLTG EE++ L E+ +AL + + VL + LP+ + R R K + + T +G +++ GF + Sbjct: 45 LSIEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVGGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDILAFLTGQEEVETVVSMLIEQARALARTGMKRHLRVLPMYAGLPS-FEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVK 364
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2) HSP 1 Score: 271.937 bits (694), Expect = 3.885e-72 Identity = 149/321 (46.42%), Postives = 212/321 (66.04%), Query Frame = 2 Query: 44 LSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKI-GCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP-DTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYF----------FNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKD--VPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQ 964 LSI++QR+ LP+FKL+N ++ + + Q ++++GETG GK+TQ+ QYLAEAG+T +G++ G TQPRRVAA +VA RVAEE G LG EVGY IRF+DCT T IK++TDGML+RE+++D L++YSVIMLDEAHERT+ TD+ GLLK++ K+R DLRLIV SATLDA++F +F C I ++ GRTFPVDI Y + V DY+ S + TV++IH E +GD+L+FLTG EE++ L E+ +AL + + VL + LP+ + R R K + + T +G +++ GF + Sbjct: 45 LSIEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDVLAFLTGQEEVETVVSMLIEQARALARTGMKRHLRVLPMYAGLPS-FEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVK 364
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 3.289e-71 Identity = 149/323 (46.13%), Postives = 209/323 (64.71%), Query Frame = 2 Query: 44 LSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLA--EAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPE------MGVLTV*RALPNEISTKNILNRPP-----RGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 + I + RR LP+ ++E ++ +NQ+++ +GETGSGKTTQ+ Q++ E + ++ CTQPRRVAA SVA+RVAEE +LGEEVGY+IRFE+ T T++KYMTDGMLLRE + D +LS+YS I+LDEAHERT+ TD+L GLLKQ+VKRRPDL++I+ SATLDAE+F YF + + ++PGRT+PV++ Y+ + DYLDSA+ TVLQIH E GDIL FLTG +EI E KI G + + V + +LP + I P R G K + + T +G +++PGF++Q + Sbjct: 84 VDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEI----EDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPH-QQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKV 401
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2) HSP 1 Score: 265.003 bits (676), Expect = 4.749e-70 Identity = 135/263 (51.33%), Postives = 188/263 (71.48%), Query Frame = 2 Query: 50 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKI-KALGKDVPEMGVLTV*RALPNE 835 I EQR++LPI++ + L Q + DN+V++++GETGSGK+TQ+ Q+L E Y +G + TQPRRVAA ++AKRVA E GCRLGE+VGY+IRF+D T T IKY+TDGMLLRE++ D LSQY ++LDEAHERT+ TD+L G +K+++K+RP LR+I+ SATL+AERFS +F I I GR +PV I+Y+ DYLD+ L T+ Q+H P GDIL FLTG +EI+ E+L + K L ++P++ + +LP E Sbjct: 89 ILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEGCVAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIHYTYTPEPDYLDACLRTIFQLHTKLPPGDILVFLTGQDEIE-ALEALIKSYSKQLPSNLPQIQACPLFASLPQE 350
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX15_CAEEL (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 4.749e-70 Identity = 141/323 (43.65%), Postives = 207/323 (64.09%), Query Frame = 2 Query: 47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAE-AGYTTKGK-------IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIH-VDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRG-----GEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 +I E+R LP+++ K + ++ + +NQ + L+GETGSGKTTQ+ Q+ E +G+ + CTQPRRVAA SVA RVAEE LG+EVGY+IRFEDC T++KY TDGMLLRE + L +Y V++LDEAHERT+ TD+L GL+K++V+ R D+++++ SATLDA +F YF +C + S+PGRTFPV+I ++ DYL++A+ TV+QIH V+E EGDIL FLTG EEI+ C+ + +I+ALG D + + + LP + PP K + + T +G +++PGF++Q + Sbjct: 68 AIWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQWAVEFMKQQQQGQPPGQARLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFEDCISERTVLKYCTDGMLLREAMNSPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNRADIKVVIMSATLDAGKFQRYFEDCPLLSVPGRTFPVEIFFTPNAEKDYLEAAIRTVIQIHMVEEVEGDILLFLTGQEEIEEACKRIDREIQALGADAGALSCIPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVISTNIAETSLTIDGVVFVIDPGFSKQKV 390
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2) HSP 1 Score: 253.447 bits (646), Expect = 1.430e-66 Identity = 138/284 (48.59%), Postives = 199/284 (70.07%), Query Frame = 2 Query: 38 SKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTT-KGK-IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD-TLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHV--DEPEGDILSFLTGSEEIDFGCESLCEKI-----KALG----KDVPEMGVLTV*RALPNEISTK 847 SK I+ + LP+F+ +++L+ + +NQV+++IGETGSGKTTQLAQYL E GY +GK I TQPRRVAA SVAKRVA E LG+EVGY+IRFED T + T +K++TDG+LLRE L+D+ L +YS +++DEAHER++NTD+L G K L+ RR DL+LI+TSAT++A++FS +F N F+IPGRTFPV Y+ V DY+++A+ ++IH+ D GDIL F+TG E+I+ ++L EK K G +++ ++ +L + ALP ++ K Sbjct: 339 SKDDIKHTKEQLPVFRCRSQLLSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANDRGKSIVVTQPRRVAAISVAKRVAMEMQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGILLRETLLDDTLDKYSCVIIDEAHERSLNTDILLGFFKILLARRRDLKLIITSATMNAKKFSAFFGNAPQFTIPGRTFPVQTIYTSNPVQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQEDIETTFDTLQEKFLQVYSKKFGTANFEEINDIEILPIYSALPADLQFK 622
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 1.748e-64 Identity = 129/251 (51.39%), Postives = 173/251 (68.92%), Query Frame = 2 Query: 68 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-----RRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSR------QEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKD 787 + PI K + +LIQAV DN LI+ G TGSGKTTQL +YL EAG++ G IG TQPR+VAA SVA+RVAEE C LG +VGY +RF+DC+ +T IKYMTDG LL+ IL D NLS++SVI+LDEAHERT+ TD+LFGLLK+L + R+ L+++V SAT++ + S +F NC IF IPGR +PV + +E T Y+ + + + IH++E GDIL FLTG EI+ CE L + +++ D Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLSKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYD 302 The following BLAST results are available for this feature:
BLAST of DY270379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY270379 ID=DY270379; Name=DY270379; organism=Citrus clementina; type=EST; length=983bpback to top |