DY270379
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 2.982e-64 Identity = 139/323 (43.03%), Postives = 200/323 (61.92%), Query Frame = 2 Query: 38 SKLSIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGK-IGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYF----------FNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALG---KDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQ 964 + L+IQ+QR LPIFK + ++ + +I++GETG GK+TQ+ Q+L EAG+ G+ I TQPRRVA ++A RVAEE C LG +VGY +RF+D + DT +K+MTDG+LLREIL D LS+YS+IM+DEAHER+ NTD+L GLL+++++ R DLR+IV+SATLDAE F +F I S+ GRT PV +++++ V DY SA+ TV+ IH E GDIL FLTG +E+ E +CEK++ L K+ + V+ ALP K + P G K + + T G +++ G+ + Sbjct: 66 ASLNIQQQRIRLPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIVITQPRRVAVVTLATRVAEEKDCILGHDVGYTVRFDDVSDKDTKVKFMTDGLLLREILADPLLSKYSIIMIDEAHERSCNTDILLGLLRKIIQIRNDLRIIVSSATLDAELFKDFFEMNETGNSDKDTAGIISVEGRTHPVAVHHTKTSVPDYCQSAVDTVINIHKHENPGDILVFLTGQDEV----EDVCEKLRELAGNLKNCDRLWVVPCYGALPAREQMK-AFDSTPHGTRKVVVATNIAEASITIPGICYVIDTGYVK 383
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 3.894e-64 Identity = 128/251 (51.00%), Postives = 173/251 (68.92%), Query Frame = 2 Query: 68 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-----RRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSR------QEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKD 787 + PI K + +LIQAV DN LI+ G TGSGKTTQL +YL EAG++ G IG TQPR+VAA SVA+RVAEE C LG +VGY +RF+DC+ +T IKYMTDG LL+ IL D NL+++SVI+LDEAHERT+ TD+LFGLLK+L + R+ L+++V SAT++ + S +F NC IF IPGR +PV + +E T Y+ + + + IH++E GDIL FLTG EI+ CE L + +++ D Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLNKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYD 302
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 6.642e-64 Identity = 127/251 (50.60%), Postives = 173/251 (68.92%), Query Frame = 2 Query: 68 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-----RRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSR------QEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKD 787 + PI K + ++IQAV DN LI+ G TGSGKTTQL +YL EAG++ G IG TQPR+VAA SVA+RVAEE C LG +VGY +RF+DC+ +T IKYMTDG LL+ IL D NL+++SVI+LDEAHERT+ TD+LFGLLK+L + R+ L+++V SAT++ + S +F NC IF IPGR +PV + +E T Y+ + + + IH++E GDIL FLTG EI+ CE L + +++ D Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYD 302
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2) HSP 1 Score: 244.588 bits (623), Expect = 6.642e-64 Identity = 127/251 (50.60%), Postives = 173/251 (68.92%), Query Frame = 2 Query: 68 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-----RRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSR------QEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKD 787 + PI K + ++IQAV DN LI+ G TGSGKTTQL +YL EAG++ G IG TQPR+VAA SVA+RVAEE C LG +VGY +RF+DC+ +T IKYMTDG LL+ IL D NL+++SVI+LDEAHERT+ TD+LFGLLK+L + R+ L+++V SAT++ + S +F NC IF IPGR +PV + +E T Y+ + + + IH++E GDIL FLTG EI+ CE L + +++ D Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYD 302
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 6.217e-62 Identity = 136/312 (43.59%), Postives = 193/312 (61.86%), Query Frame = 2 Query: 47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPD-----LRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEG-DILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQ 964 +++ QRRSLPIF+ + +L+ + + +LIGETGSGKTTQ+ QYL E G + +G I TQPRRVAA S+A RV++E LG+ VGY +RFED T DT IK++TDGMLLRE + D L +YS ++LDEAHERTI+TDVLFG++K KRR + L++IV SAT+D + FS YF + + GR P+ I Y++Q DYL +AL++V QIH + P DIL FLTG EEI+ ++ + + L P M VL + +LP + + P+G K + + T G +++ G + Sbjct: 57 ALELQRRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNRAPVLYLEGRQHPIQIFYTKQPQQDYLHAALVSVFQIHQEAPASQDILVFLTGQEEIEAMSKTCRDIARHLPDGCPSMLVLPLYASLPYSQQLR-VFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVK 367
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 6.874e-61 Identity = 134/312 (42.95%), Postives = 192/312 (61.54%), Query Frame = 2 Query: 47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPD-----LRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEG-DILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQ 964 +++ QRRSLPI + + +L+ + + +LIGETGSGKTTQ+ QYL E G + +G I TQPRRVAA S+A RV++E LG+ VGY +RF+D T DT IK++TDGMLLRE + D L +YS ++LDEAHERTI+TDVLFG++K KRR + L++IV SAT+D + FS YF + + GR P+ + Y++Q DYL +AL++V QIH + P DIL FLTG EEI+ ++ + K L P M VL + +LP + + P+G K + + T G +++ G + Sbjct: 66 AVELQRRSLPILQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTGIKFLTDGMLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNGAPVLYLEGRQHPIQVFYTKQPQNDYLHAALVSVFQIHQEAPSSQDILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLR-VFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVK 376
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHR2_YEAST (Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces cerevisiae GN=DHR2 PE=1 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.693e-59 Identity = 117/231 (50.65%), Postives = 164/231 (71.00%), Query Frame = 2 Query: 56 EQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTK--GKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEID 739 + R +LP+++ K E++ + N V +LIGETGSGK+TQ+ Q++ E Y TK G I TQPRRVAA ++A RVA+E GC+LGE+VGY++RF++ T T +KY+TDGMLLRE++++ +L +YSVI++DEAHERT+ TD++ G LK L++ RPDLR+IV SATL AE+FS +F N I + GR F V Y + D +D+ + +QI+ E GDIL FL G EEID Sbjct: 76 KMRETLPVYQHKREIMSYIESNPVTVLIGETGSGKSTQIPQFVLEKLYDTKKHGSIAVTQPRRVAAINLATRVAQEHGCKLGEQVGYSVRFDNTTTTRTRLKYLTDGMLLRELMMNSDLREYSVIVIDEAHERTVLTDLILGFLKSLIQGPRPDLRIIVMSATLQAEKFSEFFNNAPILFVEGRKFDVKQYYLKAPTDDIVDAVIRCCIQINQGEELGDILCFLPGQEEID 306
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: YK99_SCHPO (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Schizosaccharomyces pombe GN=SPAC20H4.09 PE=2 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 1.640e-54 Identity = 117/308 (37.99%), Postives = 191/308 (62.01%), Query Frame = 2 Query: 59 QRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTK-GKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNI--FSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVLTV*RALPNEISTKNILNRPPRGGEKGLWPPKLVRPL*TFNGKFLLLNPGFAQQNM 973 Q++ LPI K +N+L+ AV NQ+ I++G TG GKTTQ+ Q+L EAG+ ++ G IGCTQPRR+ A SV++RV+ E G GY+I+F+ T IKYMTDG+LL EI D L +YS+++LDE HERT++TD+L G+LK+++++R D RL+++SA++DA + S +F + SI G+ FPV+ + ++ +Y+DSA+ TV+ I+ P GDIL FL+G +EI++ + + + + +D + L + L + + N K ++ + T +G +++ GF +Q + Sbjct: 21 QKKLLPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGIIGCTQPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFFDPLLERYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQDKVCTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVD-EQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVDSGFNKQRI 327
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: HRPA_ECOLI (ATP-dependent RNA helicase hrpA OS=Escherichia coli (strain K12) GN=hrpA PE=3 SV=3) HSP 1 Score: 206.453 bits (524), Expect = 2.005e-52 Identity = 109/230 (47.39%), Postives = 150/230 (65.22%), Query Frame = 2 Query: 68 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVD-------EPEGDILSFLTGSEEI 736 +LP+ + K ++++A+ D+QV+I+ GETGSGKTTQL + E G KG IG TQPRR+AA +VA R+AEE G +GY +RF D +T++K MTDG+LL EI D L QY I++DEAHER++N D L G LK+L+ RRPDL++I+TSAT+D ERFS +F N I + GRT+PV++ Y + + + D LQ D E GDIL F++G EI Sbjct: 76 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRY--RPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREI 303
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: HRPA_HAEIN (ATP-dependent RNA helicase hrpA homolog OS=Haemophilus influenzae GN=hrpA PE=3 SV=2) HSP 1 Score: 204.527 bits (519), Expect = 7.618e-52 Identity = 113/234 (48.29%), Postives = 153/234 (65.38%), Query Frame = 2 Query: 68 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLV-KRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYS---RQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESL 757 SLP+ + K E+ + + ++QV+++ GETGSGKTTQL + E G+ G IG TQPRR+AA SVA R+AEE LG VGY +RF D +T IK MTDG+LL EI D L+QYS +++DEAHER++N D + G LKQL+ +RR DL+LI+TSAT+D ERFS +F N I + GRT+PV++ Y ++ D L L V ++ E GDIL F+ G EI E+L Sbjct: 82 SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAARSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGRTYPVEVRYRPVVEEDDQDQLQGILNAVDELQA-EGRGDILIFMNGEREIRDTAEAL 314 The following BLAST results are available for this feature:
BLAST of DY270379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY270379 ID=DY270379; Name=DY270379; organism=Citrus clementina; type=EST; length=983bpback to top |