DY270379

Overview
NameDY270379
Unique NameDY270379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length983
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX9_PONAB (ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.199e-34
Identity = 78/193 (40.41%), Postives = 121/193 (62.69%), Query Frame = 2
Query:   47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC----TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTG-PDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPV 610
            +I ++R  LP+ K ++E+++A+  N V+I+ G TG GKTTQ+ Q++ +          C    TQPRR++A SVA+RVA E G   G+  GY++RFE     P   I + T G+LLR++  +  +   S +++DE HER INTD L  +L+ +V+  P++R+++ SAT+D   F  YFFNC I  + GRT+PV
Sbjct:  380 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPV 570          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 4.199e-34
Identity = 79/193 (40.93%), Postives = 119/193 (61.66%), Query Frame = 2
Query:   47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC----TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTG-PDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPV 610
            S+ ++R  LP+ K + E+++A+  N V+I+ G TG GKTTQ+ QY+ +          C    TQPRR++A +VA+RVA E G   G+  GY++RFE     P   I + T G+LLR++  +  +   S +++DE HER INTD L  +L+ +V   P++R+++ SAT+D   F  YFFNC I  + GRTFPV
Sbjct:  382 SVLQERELLPVKKFEAEILEAISSNSVVIIRGATGCGKTTQVPQYILDDFIQNDRAAECNIVVTQPRRISAVAVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVLAYPEVRIVLMSATIDTTMFCEYFFNCPIIEVYGRTFPV 572          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 4.199e-34
Identity = 78/193 (40.41%), Postives = 121/193 (62.69%), Query Frame = 2
Query:   47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGC----TQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTG-PDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPV 610
            +I ++R  LP+ K ++E+++A+  N V+I+ G TG GKTTQ+ Q++ +          C    TQPRR++A SVA+RVA E G   G+  GY++RFE     P   I + T G+LLR++  +  +   S +++DE HER INTD L  +L+ +V+  P++R+++ SAT+D   F  YFFNC I  + GRT+PV
Sbjct:  380 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPV 570          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DQX1_BOVIN (ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=DQX1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.485e-34
Identity = 94/259 (36.29%), Postives = 144/259 (55.60%), Query Frame = 2
Query:   56 EQRRSLPIFKLKNELIQAVHDNQ--VLILIGETGSGKTTQLAQYLAE---AGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLK--QLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEV-TDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVL 808
            EQRRSLP++  +   ++ +  +   V+++ GE G GK+TQ+ Q+ AE   A    KG +  TQP  +AA S+A RVA+E    LG EVGY+I  EDCTGPDTL+++  D +LL+E+          V++LDEA ER++ +D+L GLL+  +L     DLR++V +      +   ++       +P +T        R  +  D +D+A   VL+   +E  GD+L +L   EEI   CESL  K+++L    P   VL
Sbjct:   40 EQRRSLPVWAARFIFLEHLESSPSGVVLVSGEPGCGKSTQIPQWCAEFVLARGFQKGWVTVTQPYPLAALSLALRVADEMDLTLGHEVGYSIPQEDCTGPDTLLRFCWDRLLLQEVASTRGTGARGVLILDEAQERSVASDLLQGLLRDARLGSLPGDLRVVVVTDPSLEPKLQDFWGGPPTVCVPRKTGSCPTPVYRDSLPADRVDAACQAVLEWCQEEAPGDVLVYLPSEEEISLCCESLSRKVRSLENQGPPPRVL 298          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: YL419_YEAST (Putative ATP-dependent RNA helicase YLR419W OS=Saccharomyces cerevisiae GN=YLR419W PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.163e-34
Identity = 85/254 (33.46%), Postives = 142/254 (55.91%), Query Frame = 2
Query:   47 SIQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLA-----EAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDE--------------PEGDILSFLTGSEEIDFGCE 751
            S+Q  R  LP +K +  +I  ++ N+V+++ GETGSGK+TQ+ Q++      E G   K KI CTQPRR++A  +A+RV++E     GEEVGY IR  + T   T IK+MT G+L+R +     + + +++++DE HER+I+TD++  L+K L+ R   +++++ SAT++ + F  +F       I GRTFP+  +Y  +++   LD  +     +  D+              P  D   F +G    D  C+
Sbjct:  596 SMQLVREQLPAWKKQKVIIDIINKNEVVLITGETGSGKSTQVVQFILDFLQKEKGDFGKTKIVCTQPRRISAIGLAERVSDERCVTCGEEVGYVIRGVNKTKASTRIKFMTTGVLVRLLQNARTMLENTIVVIDEVHERSIDTDLIVTLMKNLLHRVRGMKIVLMSATVNVDLFKKFFPGLATCHIEGRTFPI-TDYFLEDILSDLDFKIKREKALSYDDDSVDERNNDDQYLKPRADSKFFTSGQINYDLLCQ 848          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DQX1_HUMAN (ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 9.355e-34
Identity = 93/252 (36.90%), Postives = 145/252 (57.54%), Query Frame = 2
Query:   56 EQRRSLPIFKLKNELIQAVHDNQ--VLILIGETGSGKTTQLAQYLAEAGYTT---KGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLK--QLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIP----GRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKAL 778
            +QR++LPI+  +   ++ +  N   V+++ GE GSGK+TQ+ Q+ AE        KG++  TQP  +AA S+A RVA+E    LG EVGY+I  EDCTGP+TL+++  D +LL+E+        + V++LDEA ER++ +D L GLL+  +L K   DLR++V +      +   ++ N  I  IP     R  P+   Y      D +++A   VL++   E  GD+L FL   EEI   CESL  ++++L
Sbjct:   40 KQRQALPIWAARFTFLEQLESNPTGVVLVSGEPGSGKSTQIPQWCAEFALARGFQKGQVTVTQPYPLAARSLALRVADEMDLTLGHEVGYSIPQEDCTGPNTLLRFCWDRLLLQEVASTRGTGAWGVLVLDEAQERSVASDSLQGLLQDARLEKLPGDLRVVVVTDPALEPKLRAFWGNPPIVHIPREPGERPSPI---YWDTIPPDRVEAACQAVLELCRKELPGDVLVFLPSEEEISLCCESLSREVESL 288          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: DQX1_MOUSE (ATP-dependent RNA helicase DQX1 OS=Mus musculus GN=Dqx1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.351e-32
Identity = 91/261 (34.87%), Postives = 147/261 (56.32%), Query Frame = 2
Query:   56 EQRRSLPIFKLKNELIQAVHDNQ--VLILIGETGSGKTTQLAQYLAE----AGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRR--PDLRLIVTSATLDAERFSGYFFNCNIFSIPGRT-FPVDINYSRQEVTDYLDSALITVLQI-HVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDVPEMGVL 808
            EQRR+LPI+  +   ++ +  +   V+++ G+ GSGK+TQ+ Q+ AE     G+ T G++  TQP  +AA S+A RVA+E    LG E+GY+I  EDCTGP+T++++  D + L+E+        +SV++LDEA ER++ +D+L GLL+    R    D R++V +      +F  ++ N  I  +P        + Y     TD +++A   VL++   +E  GD+L +L   EEI   CESL  ++  L    P   VL
Sbjct:   37 EQRRALPIWAARFLFLEHLESSPTGVVLVSGDPGSGKSTQIPQWCAEFALARGFQT-GQVTVTQPYPLAAMSLASRVADEMDLTLGHEIGYSIPQEDCTGPNTMLRFCWDRLFLQEVASTRGPGAWSVLILDEAQERSVASDLLQGLLRDTRLRNLPGDPRVVVVTDPALEPKFQAFWGNSPIVRVPREPGGDPTLAYKDTVPTDLVEAACQAVLELCQQEEAPGDVLVYLPSEEEISLCCESLSGEMGTLAVPGPPPRVL 296          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: YG65_SCHPO (Uncharacterized helicase C15C4.05 OS=Schizosaccharomyces pombe GN=SPBC15C4.05 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.144e-31
Identity = 75/191 (39.27%), Postives = 120/191 (62.83%), Query Frame = 2
Query:   62 RRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGK---IGCTQPRRVAATSVAKRVAEEFG-----CRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPV 610
            R  LP    +  +I AV+++Q+LI+ G+TG GK+TQ+  +L E   T  GK   I  T+PRR++A S+A RV++E G      R  E VGY++R +    P T + Y+T G  LR + +   +   + +++DE HER+I++D+L   +  L+K+ P L++I+ SATL+AE+F  YF   N+ +IPG+T+PV
Sbjct:  628 RNQLPATMFRETIIDAVNNSQLLIISGDTGCGKSTQIPAFLLENS-TKNGKAVKIYVTEPRRISAISLANRVSQELGGNPPSARSHELVGYSVRLDSKCTPLTPLTYVTTGTFLRLLEVGNEIESVTHLIIDEVHERSIDSDLLLIHVLHLLKQHPHLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPV 817          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.681e-31
Identity = 81/206 (39.32%), Postives = 121/206 (58.74%), Query Frame = 2
Query:   50 IQEQRRSLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLAQYLA----EAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRL---------GEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILI--DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINY 622
            + E RRSLP      E++  +  N+V+I+ GETG GKTTQ+ Q++     EAG  ++  I  TQPRRV+A  VA RVA E G +L         G  VGYAIR E     +  + + T G+LLR +    D +L   S +++DE HER +++D L   L++L++R   +++++ SAT++ E F+ YF      SIPGRTF V+ +Y
Sbjct:  729 MDETRRSLPAASAAREILGLIRSNRVVIIAGETGCGKTTQVPQFILDEAIEAGRGSECNIVVTQPRRVSAIGVASRVAVERGEKLDGKKKAVAPGSLVGYAIRGERRASRECRLLFTTTGVLLRRLGAGGDTDLKGISHVVVDEVHERNVDSDFLLLELRELLRRNSRIKVVLMSATINQETFASYFGKAPCISIPGRTFAVEDHY 934          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: HRPB_ECOLI (ATP-dependent RNA helicase hrpB OS=Escherichia coli (strain K12) GN=hrpB PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 1.398e-29
Identity = 90/254 (35.43%), Postives = 136/254 (53.54%), Query Frame = 2
Query:   68 SLPIFKLKNELIQAVHDNQVLILIGETGSGKTTQLA-QYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDVLFGLLKQLVK-RRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHVDEPEGDILSFLTGSEEIDFGCESLCEKIKALGKDV---PEMGVLTV 814
            SLP+  +  EL+ A+     ++L   TG+GK+T L  Q LA  G    GKI   +PRR+AA +VA+R+AE    + G+ VGY +R ++C GP+T ++ +T+G+L R I  D  LS   +++LDE HER++  D+   LL  + +  R DL+L++ SATLD +R         +    GR+FPV+  Y         D A+       + +  G +L FL G  EI    E L  +I   G DV   P  G L++
Sbjct:    3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI---GSDVLLCPLYGALSL 251          
The following BLAST results are available for this feature:
BLAST of DY270379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
DHX9_PONAB4.199e-3440.41ATP-dependent RNA helicase A OS=Pongo abelii GN=DH... [more]
DHX9_MOUSE4.199e-3440.93ATP-dependent RNA helicase A OS=Mus musculus GN=Dh... [more]
DHX9_HUMAN4.199e-3440.41ATP-dependent RNA helicase A OS=Homo sapiens GN=DH... [more]
DQX1_BOVIN5.485e-3436.29ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=D... [more]
YL419_YEAST7.163e-3433.46Putative ATP-dependent RNA helicase YLR419W OS=Sac... [more]
DQX1_HUMAN9.355e-3436.90ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN... [more]
DQX1_MOUSE1.351e-3234.87ATP-dependent RNA helicase DQX1 OS=Mus musculus GN... [more]
YG65_SCHPO1.144e-3139.27Uncharacterized helicase C15C4.05 OS=Schizosacchar... [more]
YUM14_USTMA9.681e-3139.32Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
HRPB_ECOLI1.398e-2935.43ATP-dependent RNA helicase hrpB OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270379 ID=DY270379; Name=DY270379; organism=Citrus clementina; type=EST; length=983bp
GAATGCATACCCTAAAGCATTCACTTTTGGACAAAGGTCAAAGCTCTCCA
TCCAGGAACAGAGGCGGAGCTTGCCAATTTTCAAATTGAAGAATGAACTA
ATCCAGGCTGTTCATGATAACCAGGTCCTAATACTCATTGGTGAGACTGG
TTCAGGTAAGACAACCCAATTGGCACAGTATCTTGCAGAGGCTGGTTACA
CTACGAAGGGCAAGATTGGATGTACCCAGCCCCGTAGGGTGGCTGCAACT
TCTGTGGCCAAGAGGGTTGCTGAAGAGTTTGGCTGTCGTTTGGGAGAGGA
GGTTGGTTATGCCATTCGATTTGAGGATTGTACTGGACCAGATACTCTGA
TCAAGTACATGACTGATGGGATGTTGCTTAGGGAGATTTTGATTGATGAG
AATCTTTCTCAGTATTCTGTCATTATGCTTGATGAAGCTCATGAGAGGAC
AATCAACACTGATGTTCTTTTTGGGTTACTTAAGCAGCTTGTGAAACGGA
GACCTGACCTACGCCTGATTGTGACATCTGCCACATTGGATGCAGAGAGA
TTTTCTGGATATTTCTTCAACTGCAACATCTTCAGTATTCCAGGGAGAAC
ATTTCCAGTTGATATAAACTACTCCAGACAGGAGGTAACTGATTATCTAG
ATTCAGCATTGATCACAGTCTTGCAGATCCACGTTGATGAACCTGAAGGT
GATATTCTTTCTTTCTTGACAGGGTCAGAGGAGATAGATTTTGGCTGTGA
ATCCCTTTGCGAGAAAATAAAAGCGCTGGGTAAAGATGTTCCTGAAATGG
GTGTTTTAACCGTTTAACGTGCGCTTCCAAATGAAATTTCAACCAAAAAT
ATTTTAAACCGCCCCCCCCGGGGGGGAGAAAAGGGTTTGTGGCCACCAAA
ATTGGTGAGGCCCCTTTGAACATTTAATGGAAAATTTTTGTTATTGAATC
CCGGGTTTGCACAACAAAATATGCCATAATTCA
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