DY270379

Overview
NameDY270379
Unique NameDY270379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length983
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: H962L_ASFP4 (Putative RNA Helicase B962L OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-084 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.219e-18
Identity = 77/239 (32.22%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  119 NQVLILIGETGSGKTTQLAQYLA-----EAGYTTKGKIG----CTQPRRVAATSVAKRVAEEF---GCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILI---DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPD------LRL---IVTSATLDAERFSGYF--FNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHV----DEP-EGDILSFLTGSEEIDF 742
            ++VLI+   TGSGK+T L  ++      E  ++ +  +G    CTQPR + A ++AK +          LG+ VGY  +      P+  + Y T G+LL ++     DE  S+Y+ +++DEAHER +  D++   +K +++R         LR+   I+TSAT+D  ++S YF     NI  + GR + V+ ++      +Y+ +A  T L IH     D P E DIL F+ G  EI F
Sbjct:   49 DRVLIIKSRTGSGKSTALPVHVFRILRNENTHSFQKYLGRSVICTQPRVLTAVTLAKDIGASTHYPDMILGQTVGYQTK-PLTEKPNRGLIYATAGVLLAQLHTMTDDEIASRYAFMIIDEAHERALGIDLMLMYIKSMLERMLQRGSIGALRIPFVILTSATIDTHKYSTYFGIGKENIILVEGRQYGVETHWPLYNTNNYIKTACETALTIHKENIHDRPTEADILIFMPGMAEIRF 286          
BLAST of DY270379 vs. ExPASy Swiss-Prot
Match: H962L_ASFB7 (Putative RNA helicase B962L OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=Ba71V-072 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.510e-18
Identity = 77/239 (32.22%), Postives = 124/239 (51.88%), Query Frame = 2
Query:  119 NQVLILIGETGSGKTTQLAQYLA-----EAGYTTKGKIG----CTQPRRVAATSVAKRVAEEF---GCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREILI---DENLSQYSVIMLDEAHERTINTDVLFGLLKQLVKRRPD------LRL---IVTSATLDAERFSGYF--FNCNIFSIPGRTFPVDINYSRQEVTDYLDSALITVLQIHV----DEP-EGDILSFLTGSEEIDF 742
            ++VLI+   TGSGK+T L  ++      E  ++ +  +G    CTQPR + A ++AK +          LG+ VGY  +      P+  + Y T G+LL ++     DE  S+Y+ +++DEAHER +  D++   +K +++R         LR+   I+TSAT+D  ++S YF     NI  + GR + V+ ++      +Y+ +A  T L IH     D P E DIL F+ G  EI F
Sbjct:   49 DRVLIIKSRTGSGKSTALPVHVFRILRNENTHSFQKYLGRSVICTQPRVLTAVTLAKDIGASTHYPDMILGQTVGYHTK-PLTEKPNRGLIYATAGVLLAQLHTMTDDEIASRYAFMIIDEAHERALGIDLMLMYIKSMLQRMLQRGSIGALRIPFVILTSATIDTHKYSTYFGIGKENIILVEGRQYGVETHWPLYNTNNYIKTACETALTIHKENIHDRPTEADILIFMPGMAEIRF 286          
The following BLAST results are available for this feature:
BLAST of DY270379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
H962L_ASFP44.219e-1832.22Putative RNA Helicase B962L OS=African swine fever... [more]
H962L_ASFB75.510e-1832.22Putative RNA helicase B962L OS=African swine fever... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270379 ID=DY270379; Name=DY270379; organism=Citrus clementina; type=EST; length=983bp
GAATGCATACCCTAAAGCATTCACTTTTGGACAAAGGTCAAAGCTCTCCA
TCCAGGAACAGAGGCGGAGCTTGCCAATTTTCAAATTGAAGAATGAACTA
ATCCAGGCTGTTCATGATAACCAGGTCCTAATACTCATTGGTGAGACTGG
TTCAGGTAAGACAACCCAATTGGCACAGTATCTTGCAGAGGCTGGTTACA
CTACGAAGGGCAAGATTGGATGTACCCAGCCCCGTAGGGTGGCTGCAACT
TCTGTGGCCAAGAGGGTTGCTGAAGAGTTTGGCTGTCGTTTGGGAGAGGA
GGTTGGTTATGCCATTCGATTTGAGGATTGTACTGGACCAGATACTCTGA
TCAAGTACATGACTGATGGGATGTTGCTTAGGGAGATTTTGATTGATGAG
AATCTTTCTCAGTATTCTGTCATTATGCTTGATGAAGCTCATGAGAGGAC
AATCAACACTGATGTTCTTTTTGGGTTACTTAAGCAGCTTGTGAAACGGA
GACCTGACCTACGCCTGATTGTGACATCTGCCACATTGGATGCAGAGAGA
TTTTCTGGATATTTCTTCAACTGCAACATCTTCAGTATTCCAGGGAGAAC
ATTTCCAGTTGATATAAACTACTCCAGACAGGAGGTAACTGATTATCTAG
ATTCAGCATTGATCACAGTCTTGCAGATCCACGTTGATGAACCTGAAGGT
GATATTCTTTCTTTCTTGACAGGGTCAGAGGAGATAGATTTTGGCTGTGA
ATCCCTTTGCGAGAAAATAAAAGCGCTGGGTAAAGATGTTCCTGAAATGG
GTGTTTTAACCGTTTAACGTGCGCTTCCAAATGAAATTTCAACCAAAAAT
ATTTTAAACCGCCCCCCCCGGGGGGGAGAAAAGGGTTTGTGGCCACCAAA
ATTGGTGAGGCCCCTTTGAACATTTAATGGAAAATTTTTGTTATTGAATC
CCGGGTTTGCACAACAAAATATGCCATAATTCA
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