DY270384

Overview
NameDY270384
Unique NameDY270384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1306
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPQ_YEAST (T-complex protein 1 subunit theta OS=Saccharomyces cerevisiae GN=CCT8 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.066e-17
Identity = 60/194 (30.93%), Postives = 107/194 (55.15%), Query Frame = 1
Query:   10 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMP--IDANDRATVLGLVKSCIGTKFTSQFG--DLLADLAIDATTTVGVDLGQGLREVDIKKY--IKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 573
            +LRELD+ HPA K ++  +  Q  ++GDGT  V++LAGE+L+V+E+ I+       I + YN A +  +  LD + +    D ND+  +L ++K  I +K   ++G  D+L++L  +A + V + + Q   E+       I+V K+ GG L +S V+KG++FN++     K   +    ++ +   PL+    E
Sbjct:   71 MLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSK---KYGSEDILSELVSEAVSHV-LPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTE 260          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.818e-17
Identity = 58/192 (30.21%), Postives = 101/192 (52.60%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAND---RATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL ++ + +PAAK ++++SRTQD+EVGDGTTSV VLAGE+L   E  + +  HP  I   +  ALE A A L +      ++    R  +L + ++ + +K      D  A++ +DA   +      G   +D    I + K  GG L +S + +G +  K +       +++ NP+I++ ++ ++  K
Sbjct:   66 GATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDLLNIARTTLSSKILHTEKDHFANMVVDAVLRL-----NGNTNLD---NIHIIKKSGGSLRESYLDEGFILEKKIGV--GCPKRLENPKILIANTAMDTDK 247          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.050e-17
Identity = 52/204 (25.49%), Postives = 111/204 (54.41%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEER 612
            GN +L+E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I++  HP ++   +  A E A+ VL+ + +  +  DR T++ + K+ + TK  ++  D+L +  +D+   V     +    +D+   +++ ++      D+ +++G++ +     P  M++++ +  I+  +  LEY+K E S        EER
Sbjct:   59 GNVLLQEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVAEGFEIAKEKALEVLEQVKVTKEM-DRETLIDVAKTSLRTKVHTELADILTEAVVDSVLAV----RKPGEPIDL-HMVEIMEMKHKSETDTTLIRGLVLDHGARHP-DMKKRVEDAYILTCNVSLEYEKTEVSAGFFYKSAEER 255          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPH_ENCCU (T-complex protein 1 subunit eta OS=Encephalitozoon cuniculi GN=CCT7 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.907e-17
Identity = 58/205 (28.29%), Postives = 100/205 (48.78%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEE 609
            G  IL+ +++ HP  + ++ LS +QD EVGDGTTSV++L  E+L   +  I  N+    I     +     +  L+ + M +D      +  L  +CI +K      +  + + +DA             ++D  + I V+KV GG + DS  + G+ F K     G  +  ++I+NPRI+ L+  LE+K   ++    +G  EE
Sbjct:   59 GATILKHMNIRHPVGRLLVALSESQDSEVGDGTTSVVILTTEILSCLKPLIKDNFDLGCIKGCLEELRMMCIEHLEKMGMELDDE---VLYKLAGTCITSKNIRHEKEYFSRMIVDAVKQA---------KIDDAESIGVKKVQGGSIGDSVAVNGIAFEKCFTYAGYEQQPKRILNPRILCLNVELEWKSERDNAEIRVGGVEE 251          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 2.625e-16
Identity = 54/227 (23.79%), Postives = 123/227 (54.19%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIK 681
            GN +L E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I++  HP +I   +  A E A+ VL+ I +  +  DR T++ + ++ + TK  ++  D+L +  +D+   +     +    +D+   +++ ++      D+ +++G++ +     P  M++++ +  I+  +  LEY+K E ++       EER  + +  ++  I++   +I ++K
Sbjct:   60 GNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQVLEQIKVSREM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI----KKQDEPIDL-FMVEIMEMKHKSETDTSLIRGLVLDHGARHP-DMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKF-IEDRVKKIVELK 278          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.428e-16
Identity = 58/168 (34.52%), Postives = 92/168 (54.76%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPID-----ANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 489
            G  IL+ + + + AAK ++ +S+ QD+EVGDGTTSV V A E+L  AE  +N   HP VI   Y  A + A+  L   A  ID     A  R+ +  + ++ + +K  SQ  +  A LA+DA   +     +G   +D    I++ K+ GG+L+DS + +G + NK +
Sbjct:   63 GATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALR--ASSIDNSSDPAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRL-----KGSTNLD---NIQIIKILGGKLDDSFLDEGFILNKTI 220          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 3.428e-16
Identity = 59/192 (30.73%), Postives = 101/192 (52.60%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAND---RATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL+ + V +PAAK ++++SR QD+EVGDGTTSV VLA E+L  AE  I K  HP  I   + +A + A   L + A+   +++   R  ++ +  + + +K  +   D    LA++A   +    G G  E      I + K  GG L DS + +G + +K +       ++I N +I++ ++ ++  K
Sbjct:   67 GATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL---KGSGNLEA-----IHIIKKLGGSLADSYLDEGFLLDKKIGV--NQPKRIENAKILIANTGMDTDK 248          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 3.428e-16
Identity = 59/192 (30.73%), Postives = 101/192 (52.60%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAND---RATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL+ + V +PAAK ++++SR QD+EVGDGTTSV VLA E+L  AE  I K  HP  I   + +A + A   L + A+   +++   R  ++ +  + + +K  +   D    LA++A   +    G G  E      I + K  GG L DS + +G + +K +       ++I N +I++ ++ ++  K
Sbjct:   67 GATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL---KGSGNLEA-----IHIIKKLGGSLADSYLDEGFLLDKKIGV--NQPKRIENAKILIANTGMDTDK 248          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 3.428e-16
Identity = 60/192 (31.25%), Postives = 100/192 (52.08%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAND---RATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL+ + V +PAAK ++++SR QD+EVGDGTTSV VLA E+L  AE  I K  HP  I   + +A + A   L   A+   +++   R  ++ +  + + +K  +   D    LA++A   +    G G  E      I V K  GG L DS + +G + +K +       ++I N +I++ ++ ++  K
Sbjct:   67 GATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL---KGSGNLEA-----IHVIKKLGGSLADSYLDEGFLLDKKIGV--NQPKRIENAKILIANTGMDTDK 248          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 4.477e-16
Identity = 50/204 (24.51%), Postives = 110/204 (53.92%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEER 612
            GN +L E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I++  HP +I   +  A E A+  L+ + +  +  DR T++ + ++ + TK  ++  D+L +  +D+   +     +    +D+   +++ ++      D+ +++G++ +     P  M++++ N  I+  +  LEY+K E ++       EER
Sbjct:   60 GNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI----RKKDEPIDL-FMVEIMEMKHKSETDTSLIRGLVLDHGARHP-DMKKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEER 256          
The following BLAST results are available for this feature:
BLAST of DY270384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPQ_YEAST1.066e-1730.93T-complex protein 1 subunit theta OS=Saccharomyces... [more]
TCPB_DICDI1.818e-1730.21T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPZ_CHICK4.050e-1725.49T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPH_ENCCU6.907e-1728.29T-complex protein 1 subunit eta OS=Encephalitozoon... [more]
TCPZ_RABIT2.625e-1623.79T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]
TCPB_SCHPO3.428e-1634.52Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPB_MACFA3.428e-1630.73T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN3.428e-1630.73T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_BOVIN3.428e-1631.25T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPZ_MOUSE4.477e-1624.51T-complex protein 1 subunit zeta OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YH07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270384 ID=DY270384; Name=DY270384; organism=Citrus clementina; type=EST; length=1306bp
GGAAATGCTATTCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTC
AATGATTGAGTTAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAA
CATCTGTCATTGTGCTAGCTGGTGAGATGCTTCATGTTGCGGAAGAGTTC
ATCAACAAGAATTATCATCCTACGGTTATCTGTCGAGCTTACAATAAGGC
TTTGGAGGATGCTGTTGCTGTGCTTGATACAATTGCAATGCCCATCGATG
CAAATGATCGTGCAACAGTGTTGGGCCTGGTCAAGAGTTGCATTGGAACT
AAGTTCACAAGCCAATTTGGGGATCTGCTAGCTGATCTTGCAATTGATGC
CACCACTACTGTTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATA
TTAAGAAGTACATTAAAGTTGAGAAGGTCCCTGGTGGCCAGTTGGAAGAT
TCTAGGGTTCTGAAAGGAGTTATGTTCAACAAAGATGTTGTTGCCCCTGG
GAAAATGAGAAGAAAAATTGTCAACCCACGTATTATCCTTCTTGATTCTC
CCCTTGAGTACAAGAAAGGAGAGAATTCAACAAATGCTGAGTTGGGTTAA
GAAGAAGAACGGGGAGTCATGTTTGAAAATAGAAAGAGGATTTCCATCCA
AAACCCCTGCATGCAAATTGGGAAAATTAAACCCGACTTGATAATTTACA
AGAAAGGGTTCTATGCTCCTTGCCCGCCATTCTCTTAAACCAAGGCTGCA
CTTATGGCTCTTAGGATGCGCTGGGCCCACCGCCCTTATTTATTTCCCCC
ATGCCTGGGGGGGCCGTGCCTGGGACTCCTACCTGATCGATTAGAAGTTT
CTCGTGTTGGCGACGGGGCCCCGGCCTCTCTAGGGCGACTCACCACGGGG
CGATGTTCCTTGACGATCTAGATCGACTGAAAGAAATCCGACCACTTCGA
AGTCACCCCCCATATAACCATATCTAGGATCTCACCAAGCACTATATCTG
TGAACCACATGCAACGTCAGACACTCCCCCACGCCTATCCCAAAGACAAT
TCCCTAACTCAATTCACTCTTTTATCCTTAGCCTTTTTTTCATACAAATT
CTCTCCTCCACGAATAGTCCTTCATACCTCTTCTGTTCCAGTGTTGTCCA
ATGGATCCTAGTTATCGCCGAAGACACCAATGAGTTCTCTCCACTTTAAT
AACGAGTGACTGGTACGCATAATAAGGCAACTCTGACTGTGATCAAACTA
CGGCCACCATGAAACACCTGCACAAACTACATATTTCCATACGATCGATA
TTCTGA
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