DY270384

Overview
NameDY270384
Unique NameDY270384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1306
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPQ_MACFA (T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.348e-12
Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   10 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAN--DRATVLGLVKSCIGTKFTSQFGD--LLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKD 486
            ILREL+V HPAAK ++  S  Q++EVGDGT  V+V AG +L +AEE +      + +   Y  A   A  +L  +      N  D   V  L+++ I +K   Q+G+   LA L   A  ++  D G     VD    I+V K+ G  +  S VL G++F K+
Sbjct:   72 ILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDVDEVSSLLRTSIMSK---QYGNEVFLAKLIAQACVSIFPDSGH--FNVD---NIRVCKILGSGISSSSVLHGMVFKKE 226          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 1.348e-12
Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   10 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAN--DRATVLGLVKSCIGTKFTSQFGD--LLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKD 486
            ILREL+V HPAAK ++  S  Q++EVGDGT  V+V AG +L +AEE +      + +   Y  A   A  +L  +      N  D   V  L+++ I +K   Q+G+   LA L   A  ++  D G     VD    I+V K+ G  +  S VL G++F K+
Sbjct:   72 ILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIMSK---QYGNEVFLAKLIAQACVSIFPDSGH--FNVD---NIRVCKILGSGISSSSVLHGMVFKKE 226          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPQ_MOUSE (T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 3.922e-12
Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   10 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAN--DRATVLGLVKSCIGTKFTSQFGD--LLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKD 486
            ILREL+V HPAAK ++  S  Q++EVGDGT  V+V AG +L +AEE +      + +   Y  A + A  +L  +      N  D   V  L+++ I +K   Q+G    LA L   A  ++  D G     VD    I+V K+ G  +  S VL G++F K+
Sbjct:   72 ILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIACKKAHEILPELVCCSAKNLRDVDEVSSLLRTSIMSK---QYGSETFLAKLIAQACVSIFPDSGN--FNVD---NIRVCKILGSGIYSSSVLHGMVFKKE 226          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPQ_BOVIN (T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 3.922e-12
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   10 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDAN--DRATVLGLVKSCIGTKFTSQFGD--LLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKD 486
            ILREL+V HPAAK ++  S  Q++EVGDGT  V+V AG +L +AEE +      + +   Y  A + A  +L  +      N  D   V  L+ + + +K   Q+G+   LA L   A  ++  D G     VD    I+V K+ G  +  S VL G++F K+
Sbjct:   72 ILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSK---QYGNEVFLAKLIAQACVSIFPDSGH--FNVD---NIRVCKILGSGVHSSSVLHGMVFKKE 226          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPQ_CAEEL (T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=Y55F3AR.3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.664e-11
Identity = 53/190 (27.89%), Postives = 95/190 (50.00%), Query Frame = 1
Query:   10 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAM--PIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 573
            IL+EL++ HPAA+ +I  +  Q++++GD T +V++LA  +L  A   I+    P  +   Y +A E A+ +L T+ +    D  +   V   ++S I +K      D++ADL   A  T           VD    I++ K+ G  +  S V+ G++F +   A G++ R+  + RI +   P +  + E
Sbjct:   71 ILKELEIQHPAARIIIMATEMQEKQIGDNTNTVVILAAALLEHAANLIHMGMTPQEVAAGYEQAAEKALEILPTLVVKEATDMKNIEEVRQYIRSAITSKQYDN-EDIIADLVAKACVTT-CPANSFNFNVD---NIRICKIIGSGVHTSTVMNGMVFKRG--AEGEI-REARDARIAVYTCPFDLTQTE 252          
The following BLAST results are available for this feature:
BLAST of DY270384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPQ_MACFA1.348e-1234.97T-complex protein 1 subunit theta OS=Macaca fascic... [more]
TCPQ_HUMAN1.348e-1234.97T-complex protein 1 subunit theta OS=Homo sapiens ... [more]
TCPQ_MOUSE3.922e-1234.97T-complex protein 1 subunit theta OS=Mus musculus ... [more]
TCPQ_BOVIN3.922e-1234.36T-complex protein 1 subunit theta OS=Bos taurus GN... [more]
TCPQ_CAEEL5.664e-1127.89T-complex protein 1 subunit theta OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YH07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270384 ID=DY270384; Name=DY270384; organism=Citrus clementina; type=EST; length=1306bp
GGAAATGCTATTCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTC
AATGATTGAGTTAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAA
CATCTGTCATTGTGCTAGCTGGTGAGATGCTTCATGTTGCGGAAGAGTTC
ATCAACAAGAATTATCATCCTACGGTTATCTGTCGAGCTTACAATAAGGC
TTTGGAGGATGCTGTTGCTGTGCTTGATACAATTGCAATGCCCATCGATG
CAAATGATCGTGCAACAGTGTTGGGCCTGGTCAAGAGTTGCATTGGAACT
AAGTTCACAAGCCAATTTGGGGATCTGCTAGCTGATCTTGCAATTGATGC
CACCACTACTGTTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATA
TTAAGAAGTACATTAAAGTTGAGAAGGTCCCTGGTGGCCAGTTGGAAGAT
TCTAGGGTTCTGAAAGGAGTTATGTTCAACAAAGATGTTGTTGCCCCTGG
GAAAATGAGAAGAAAAATTGTCAACCCACGTATTATCCTTCTTGATTCTC
CCCTTGAGTACAAGAAAGGAGAGAATTCAACAAATGCTGAGTTGGGTTAA
GAAGAAGAACGGGGAGTCATGTTTGAAAATAGAAAGAGGATTTCCATCCA
AAACCCCTGCATGCAAATTGGGAAAATTAAACCCGACTTGATAATTTACA
AGAAAGGGTTCTATGCTCCTTGCCCGCCATTCTCTTAAACCAAGGCTGCA
CTTATGGCTCTTAGGATGCGCTGGGCCCACCGCCCTTATTTATTTCCCCC
ATGCCTGGGGGGGCCGTGCCTGGGACTCCTACCTGATCGATTAGAAGTTT
CTCGTGTTGGCGACGGGGCCCCGGCCTCTCTAGGGCGACTCACCACGGGG
CGATGTTCCTTGACGATCTAGATCGACTGAAAGAAATCCGACCACTTCGA
AGTCACCCCCCATATAACCATATCTAGGATCTCACCAAGCACTATATCTG
TGAACCACATGCAACGTCAGACACTCCCCCACGCCTATCCCAAAGACAAT
TCCCTAACTCAATTCACTCTTTTATCCTTAGCCTTTTTTTCATACAAATT
CTCTCCTCCACGAATAGTCCTTCATACCTCTTCTGTTCCAGTGTTGTCCA
ATGGATCCTAGTTATCGCCGAAGACACCAATGAGTTCTCTCCACTTTAAT
AACGAGTGACTGGTACGCATAATAAGGCAACTCTGACTGTGATCAAACTA
CGGCCACCATGAAACACCTGCACAAACTACATATTTCCATACGATCGATA
TTCTGA
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