DY270384

Overview
NameDY270384
Unique NameDY270384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1306
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11473 contig Ccv1_Contig11473:326..1631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.531e-29
Identity = 81/236 (34.32%), Postives = 132/236 (55.93%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKG 708
            G  IL+E+DV HP AK ++E+S+ QD  VGDGTT+ +VL+GE+L  AE  +++  HPTVI   Y  A+ +A  ++D IA    + D AT+  +  + +  K T    D LADL + A   V  ++  G   VD    IKV+K  GG + D++ + G++ +K+ V   KM   + N +I L+DS LE KK E     ++  +  +   F N++  + +    +I K   ++++ +KG
Sbjct:   64 GATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAE--KSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAV-AEVRDGKTIVDTAN-IKVDKKNGGSVNDTQFISGIVIDKEKV-HSKMPDVVKNAKIALIDSALEIKKTEIEAKVQIS-DPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG 293          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 2.989e-28
Identity = 76/236 (32.20%), Postives = 134/236 (56.78%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKG 708
            G  ILRE+D++HPAAK ++E+++TQ++EVGDGTT+ +++AGE+L  AE+ I    HPT+I   Y  A   A  +L+ I+M  +A+DR T++ +  + +  K + +  + LA+L +DA   V  D      E+D K  I ++++ G  + +SR++ G++ +K   A   M ++I   RI LL  P+E K  E      L    +     E  +++ I++   +I     +++  +KG
Sbjct:   64 GVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAALKAQEILEEISM--EASDRDTLMKVAITAMTGKGSERAKEKLAELVVDAVMQVEED-----GEID-KDNINIQRIQGASVNESRIVNGIVIDKS-RADTSMPKRIEKARIALLKYPIEVKDLETDAKIRLTDPSQMQAFIEQEEQM-IRDMVEKIKSSGANVVFCQKG 289          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.659e-28
Identity = 81/239 (33.89%), Postives = 138/239 (57.74%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIA--MPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKGF 711
            G  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +++  HP  I   Y +A   A+  LD I+  + +D N+   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD  + IKVE   GG+LED++++KGV+ +KD   P +M ++++N +I +L  P E  K +     ++   E+   + +  K    +    QI +   +L I + GF
Sbjct:   74 GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDNVLVDINNPEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV-ADMER--RDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP-QMPKEVLNAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKE-KFEEMIAQIKETGANLAICQWGF 306          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.659e-28
Identity = 82/239 (34.31%), Postives = 138/239 (57.74%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIA--MPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKGF 711
            G  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +++  HP  I   Y +A   A+  LD I+  + +D N+   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD  + IKVE   GG+LED++++KGV+ +KD   P +M +K+V+ +I +L  P E  K +     ++   E+   + +  K    +    QI +   +L I + GF
Sbjct:   74 GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTV-ADMER--RDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP-QMPKKVVDAKIAILTCPFEPPKPKTKHKLDVMSVEDYKALQKYEKE-KFEEMIKQIKETGANLAICQWGF 306          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.697e-28
Identity = 72/236 (30.51%), Postives = 131/236 (55.51%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKG 708
            G  IL ++D+ HPAAK ++++++ QDEE  DGT + ++LAGE++  AEE + K  HPT+I   + KA E A+  ++ IA  +  ND   +  +  + + +K  +   + LAD+   A T V  +L      VD+   I++ K  GG + D++++ G++ +K+VV PG M +++ N +I LLD+ LE +K E      +    +     E  + + ++    +I     +++I +KG
Sbjct:   72 GATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTIEEIAQKVSVNDMDILKKVAMTSLNSKAVAGAREYLADIVAKAVTQV-AELRGDRWYVDLDN-IQIVKKHGGSINDTQIIYGIVVDKEVVHPG-MPKRVENAKIALLDASLEVEKPELDAEIRINDPTQMKKFLEEEENL-LKEKVDKIAATGANVVICQKG 303          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.136e-27
Identity = 73/236 (30.93%), Postives = 129/236 (54.66%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKG 708
            G  IL ++D+ HP  K ++++++ QDEE  DGT + ++LAGE+   AE+ + K  HPT+I   Y KA E A+  +  IA P+  ND   +  +  + +G+K  +   + LADL + A   V  +L      VD+   +++ K  GG + D++++ G++ +K+VV PG M ++I N +I LLD+ LE +K E      +    +     E  + I ++    +I     +++I +KG
Sbjct:   71 GATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQDIAQPVSINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAVAQV-AELRGDKWYVDLDN-VQIVKKHGGSINDTQLVYGIVVDKEVVHPG-MPKRIENAKIALLDASLEVEKPELDAEIRINDPTQMHKFLEEEENI-LKEKVDKIAATGANVVICQKG 302          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.136e-27
Identity = 81/239 (33.89%), Postives = 136/239 (56.90%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTI--AMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKGF 711
            G  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +++  HP  I   Y +A   A+  LD I  ++ +D  D   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD  + IKVE   GG+LED++++KGV+ +KD   P +M +K+ + +I +L  P E  K +     ++   E+   + +  K    +    QI +   +L I + GF
Sbjct:   74 GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV-ADMER--RDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP-RMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKE-KFEEMIQQIKETGANLAICQWGF 306          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.484e-27
Identity = 81/239 (33.89%), Postives = 136/239 (56.90%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTI--AMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKGF 711
            G  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +++  HP  I   Y +A   A+  LD I  ++ +D  D   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD  + IKVE   GG+LED++++KGV+ +KD   P +M +K+ + +I +L  P E  K +     ++   E+   + +  K    +    QI +   +L I + GF
Sbjct:   74 GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV-ADMER--RDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP-QMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKE-KFEEMIQQIKETGANLAICQWGF 306          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.484e-27
Identity = 81/239 (33.89%), Postives = 136/239 (56.90%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTI--AMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKGF 711
            G  IL  +DV H  AK M+ELS++QD+E+GDGTT V+VLAG +L  AE+ +++  HP  I   Y +A   A+  LD I  ++ +D  D   ++   K+ +G+K  +     +A++A++A  TV  D+ +  R+VD  + IKVE   GG+LED++++KGV+ +KD   P +M +K+ + +I +L  P E  K +     ++   E+   + +  K    +    QI +   +L I + GF
Sbjct:   74 GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV-ADMER--RDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP-QMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKE-KFEEMIQQIKETGANLAICQWGF 306          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.938e-27
Identity = 73/236 (30.93%), Postives = 129/236 (54.66%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKKG 708
            G  IL ++D+ HP  K ++++++ QDEE  DGT + ++LAGE+   AE+ + K  HPT+I   Y KA E A+  +  IA P+  ND   +  +  + +G+K  +   + LADL + A   V  +L      VD+   +++ K  GG + D++++ G++ +K+VV PG M ++I N +I LLD+ LE +K E      +    +     E  + I ++    +I     +++I +KG
Sbjct:   71 GATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQEIAQPVTINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAVAQV-AELRGDKWYVDLDN-VQIVKKHGGSVNDTQLVYGIVVDKEVVHPG-MPKRIENAKIALLDASLEVEKPELDAEIRINDPTQMHKFLEEEENI-LKEKVDKIAATGANVVICQKG 302          
The following BLAST results are available for this feature:
BLAST of DY270384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THSA_THEAC3.531e-2934.32Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSA_METTH2.989e-2832.20Thermosome subunit alpha OS=Methanobacterium therm... [more]
TCPE_RAT6.659e-2833.89T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MOUSE6.659e-2834.31T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
THSB_SULTO8.697e-2830.51Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSB_SULSH1.136e-2730.93Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
TCPE_PONAB1.136e-2733.89T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA1.484e-2733.89T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN1.484e-2733.89T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
THSB_SULSO1.938e-2730.93Thermosome subunit beta OS=Sulfolobus solfataricus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YH07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270384 ID=DY270384; Name=DY270384; organism=Citrus clementina; type=EST; length=1306bp
GGAAATGCTATTCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTC
AATGATTGAGTTAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAA
CATCTGTCATTGTGCTAGCTGGTGAGATGCTTCATGTTGCGGAAGAGTTC
ATCAACAAGAATTATCATCCTACGGTTATCTGTCGAGCTTACAATAAGGC
TTTGGAGGATGCTGTTGCTGTGCTTGATACAATTGCAATGCCCATCGATG
CAAATGATCGTGCAACAGTGTTGGGCCTGGTCAAGAGTTGCATTGGAACT
AAGTTCACAAGCCAATTTGGGGATCTGCTAGCTGATCTTGCAATTGATGC
CACCACTACTGTTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATA
TTAAGAAGTACATTAAAGTTGAGAAGGTCCCTGGTGGCCAGTTGGAAGAT
TCTAGGGTTCTGAAAGGAGTTATGTTCAACAAAGATGTTGTTGCCCCTGG
GAAAATGAGAAGAAAAATTGTCAACCCACGTATTATCCTTCTTGATTCTC
CCCTTGAGTACAAGAAAGGAGAGAATTCAACAAATGCTGAGTTGGGTTAA
GAAGAAGAACGGGGAGTCATGTTTGAAAATAGAAAGAGGATTTCCATCCA
AAACCCCTGCATGCAAATTGGGAAAATTAAACCCGACTTGATAATTTACA
AGAAAGGGTTCTATGCTCCTTGCCCGCCATTCTCTTAAACCAAGGCTGCA
CTTATGGCTCTTAGGATGCGCTGGGCCCACCGCCCTTATTTATTTCCCCC
ATGCCTGGGGGGGCCGTGCCTGGGACTCCTACCTGATCGATTAGAAGTTT
CTCGTGTTGGCGACGGGGCCCCGGCCTCTCTAGGGCGACTCACCACGGGG
CGATGTTCCTTGACGATCTAGATCGACTGAAAGAAATCCGACCACTTCGA
AGTCACCCCCCATATAACCATATCTAGGATCTCACCAAGCACTATATCTG
TGAACCACATGCAACGTCAGACACTCCCCCACGCCTATCCCAAAGACAAT
TCCCTAACTCAATTCACTCTTTTATCCTTAGCCTTTTTTTCATACAAATT
CTCTCCTCCACGAATAGTCCTTCATACCTCTTCTGTTCCAGTGTTGTCCA
ATGGATCCTAGTTATCGCCGAAGACACCAATGAGTTCTCTCCACTTTAAT
AACGAGTGACTGGTACGCATAATAAGGCAACTCTGACTGTGATCAAACTA
CGGCCACCATGAAACACCTGCACAAACTACATATTTCCATACGATCGATA
TTCTGA
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