DY270384

Overview
NameDY270384
Unique NameDY270384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1306
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.176e-24
Identity = 74/204 (36.27%), Postives = 114/204 (55.88%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGT----KFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENSTNAEL 594
            G  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++ +  HP +I RA+  A + AV  +  IA+ +   D+     L++ C  T    K  SQ  +  + + +DA   +  DL Q        K I ++KV GG LEDS+++ GV F K     G     +K  +P+I LL+  LE K  ++  NAE+
Sbjct:   62 GATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKDIAVSVKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVVDAVMMLD-DLLQ-------LKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYQSPKIALLNVELELKAEKD--NAEV 255          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.535e-24
Identity = 74/204 (36.27%), Postives = 114/204 (55.88%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSC----IGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENSTNAEL 594
            G  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++ +  HP +I RA+  A + AV  +  IA+ +   D+     L++ C    + +K  SQ     A + +DA   +  DL Q        K I ++KV GG LEDS+++ GV F K     G     +K  NP++ LL+  LE K  ++  NAE+
Sbjct:   62 GATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-DLLQ-------LKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKVALLNVELELKAEKD--NAEI 255          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.005e-24
Identity = 66/237 (27.85%), Postives = 127/237 (53.59%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVV--APGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDLIIYKK 705
            G+ IL+++ + HP A+ ++E+S  QD E GDGTTSV++L G +L  AE  +NK  HPT+I  ++  A + +V +L  +   +  +DR  ++    + + +K  SQ+   LA LA+D+   +     +  + VD+     V+KV GG ++D+ ++ GV+  +  +  A G  R++    +I L+   +   K +   N  +    +   + +  +R  + N C +I K K ++++ +K
Sbjct:   61 GHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKIS---DENSKNVDLNDIRLVKKV-GGTIDDTEMIDGVVLTQTAIKSAGGPTRKE--KAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILK-EERAYLLNICKKIKKAKCNVLLIQK 290          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.619e-24
Identity = 72/204 (35.29%), Postives = 113/204 (55.39%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSC----IGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENSTNAEL 594
            G  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++ +  HP +I RA+  A + AV  +  IA+ +   D+     +++ C    + +K  SQ     A + +DA           L E+   K I ++KV GG LE+S+++ GV F K     G     +K  NP+I LL+  LE K  ++  NAE+
Sbjct:   62 GATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMM--------LDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELELKAEKD--NAEI 255          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.619e-24
Identity = 73/212 (34.43%), Postives = 127/212 (59.91%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVK---SCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFE 627
            G  IL  + V +  AK M++LS++QD+E+GDGTT V+VLAG +L  AE+ I K  HP  I   Y  A + A   L TI+  I+ + +  +  L+K   +C+G+K  ++F   ++++A+ A  +V  DL +  ++V+++  IK+E   GG+LED++++KG++ +K +  P +M + I + +I LL  P E  K +   + E+   E+  V+ E
Sbjct:   70 GATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETACKIATEHLKTISDSIEFS-KDNIEPLIKTAMTCLGSKIVNRFHRQMSEIAVKAVISV-ADLER--KDVNLEN-IKLEGKEGGKLEDTQLVKGIIIDKGISHP-QMPKIIKDAKICLLTCPFEPPKPKTKNSIEITKAEDFKVLGE 275          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.619e-24
Identity = 59/163 (36.20%), Postives = 98/163 (60.12%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 489
            G  IL+++ V HP+AK ++ELS+ QD E GDGTTSV+V+AG +L      + +  HPT+I  ++ KA++  V VL  ++ P+   DR T+L    + + +K  SQ+  LLA +++DA   V +D       VD+   IK+ K  GG ++D  +++G++  + V
Sbjct:   71 GATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQLGDRETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRV-IDPATA-TSVDLHD-IKIIKKLGGTIDDCELVEGLVLTQRV 230          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.467e-24
Identity = 74/204 (36.27%), Postives = 113/204 (55.39%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSC----IGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENSTNAEL 594
            G  IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E L   + ++ +  HP +I RA+  A + AV  +  IA+ +   D+     L++ C    + +K  SQ     A + +DA   +  DL Q        K I ++KV GG LE+S+++ GV F K     G     +K  NP I LL+  LE K  ++  NAE+
Sbjct:   62 GATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-DLLQ-------LKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKD--NAEI 255          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 7.619e-24
Identity = 67/190 (35.26%), Postives = 106/190 (55.79%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVA-VLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  ILR L+V HPAAK ++EL++ QDEEVGDGTTSV++LA E+L  A+E + +  HPT I   Y  A ++A   + + +  P+D   R +++ + K+ + +K      +  + + +DA  +V +   +G     IK  I V K  G    +S ++ G   N   +A  +M +KIVN +I  LD  L+  K
Sbjct:   61 GATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDELGRDSLINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIKA-INVLKAHGKSARESVLIPGYALN-CTIASQQMPKKIVNAKIACLDFSLQKTK 248          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.951e-24
Identity = 71/204 (34.80%), Postives = 117/204 (57.35%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQF----GDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENSTNAEL 594
            G  IL+ LDV HPAAK+++++SR QD EVGDGTTSV +LAGE++  A+ F+ +     +I + Y KA+  AV  ++ +A+ I  +++++   L++ C  T  +S+      D    + +DA       L     ++D  K I ++K+PGG +E+S  + GV F K     G  +  +K  NP+I+ L+  LE K  ++  NAE+
Sbjct:   66 GATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDI-TSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAV------LSLDRNDLD-DKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKD--NAEV 259          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.951e-24
Identity = 60/164 (36.59%), Postives = 98/164 (59.76%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDA---TTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 483
            G  IL++++V HPAAK ++ELSR QD E GDGTTSV+V+AG +L   E+ +    HPT I  A+ K    AV +L  ++ PI+  DR +++    + + +K  SQ    LA +A++A    T  G + G     VD+K  +K+ +  GG ++D+ ++ G++F +
Sbjct:   67 GATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEMSTPIELTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKVTEAGHESG-----VDLKN-VKIIRSLGGTIDDTELVDGLVFTQ 224          
The following BLAST results are available for this feature:
BLAST of DY270384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPH_CHICK1.176e-2436.27T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPH_PONAB1.535e-2436.27T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPD_YEAST2.005e-2427.85T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPH_MOUSE2.619e-2435.29T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPE_DICDI2.619e-2434.43T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPD_TAKRU2.619e-2436.20T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPH_BOVIN4.467e-2436.27T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPA_DROME7.619e-2435.26T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPH_YEAST9.951e-2434.80T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPD_AEDTR9.951e-2436.59T-complex protein 1 subunit delta OS=Aedes triseri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YH07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270384 ID=DY270384; Name=DY270384; organism=Citrus clementina; type=EST; length=1306bp
GGAAATGCTATTCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTC
AATGATTGAGTTAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAA
CATCTGTCATTGTGCTAGCTGGTGAGATGCTTCATGTTGCGGAAGAGTTC
ATCAACAAGAATTATCATCCTACGGTTATCTGTCGAGCTTACAATAAGGC
TTTGGAGGATGCTGTTGCTGTGCTTGATACAATTGCAATGCCCATCGATG
CAAATGATCGTGCAACAGTGTTGGGCCTGGTCAAGAGTTGCATTGGAACT
AAGTTCACAAGCCAATTTGGGGATCTGCTAGCTGATCTTGCAATTGATGC
CACCACTACTGTTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATA
TTAAGAAGTACATTAAAGTTGAGAAGGTCCCTGGTGGCCAGTTGGAAGAT
TCTAGGGTTCTGAAAGGAGTTATGTTCAACAAAGATGTTGTTGCCCCTGG
GAAAATGAGAAGAAAAATTGTCAACCCACGTATTATCCTTCTTGATTCTC
CCCTTGAGTACAAGAAAGGAGAGAATTCAACAAATGCTGAGTTGGGTTAA
GAAGAAGAACGGGGAGTCATGTTTGAAAATAGAAAGAGGATTTCCATCCA
AAACCCCTGCATGCAAATTGGGAAAATTAAACCCGACTTGATAATTTACA
AGAAAGGGTTCTATGCTCCTTGCCCGCCATTCTCTTAAACCAAGGCTGCA
CTTATGGCTCTTAGGATGCGCTGGGCCCACCGCCCTTATTTATTTCCCCC
ATGCCTGGGGGGGCCGTGCCTGGGACTCCTACCTGATCGATTAGAAGTTT
CTCGTGTTGGCGACGGGGCCCCGGCCTCTCTAGGGCGACTCACCACGGGG
CGATGTTCCTTGACGATCTAGATCGACTGAAAGAAATCCGACCACTTCGA
AGTCACCCCCCATATAACCATATCTAGGATCTCACCAAGCACTATATCTG
TGAACCACATGCAACGTCAGACACTCCCCCACGCCTATCCCAAAGACAAT
TCCCTAACTCAATTCACTCTTTTATCCTTAGCCTTTTTTTCATACAAATT
CTCTCCTCCACGAATAGTCCTTCATACCTCTTCTGTTCCAGTGTTGTCCA
ATGGATCCTAGTTATCGCCGAAGACACCAATGAGTTCTCTCCACTTTAAT
AACGAGTGACTGGTACGCATAATAAGGCAACTCTGACTGTGATCAAACTA
CGGCCACCATGAAACACCTGCACAAACTACATATTTCCATACGATCGATA
TTCTGA
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