DY270384

Overview
NameDY270384
Unique NameDY270384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1306
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11473 contig Ccv1_Contig11473:326..1631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 6.037e-21
Identity = 65/190 (34.21%), Postives = 102/190 (53.68%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVL-DTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT I   Y  A ++AV  + + + +  D   +  ++   K+ + +K     GD  A++ +DA   V     +G     +   I V K  G   ++S ++ G   N  VVA   M ++IVN +I  LD  L+  K
Sbjct:   58 GATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELGKDCLINAAKTSMSSKIIGIDGDFFANMVVDAVLAVKYTDVKGQPRYPVNS-INVLKAHGRSQKESMLINGYALN-CVVASQGMPKRIVNAKIACLDFSLQKTK 245          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 7.885e-21
Identity = 64/190 (33.68%), Postives = 106/190 (55.79%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMR-RKIVNPRIILLDSPLEYKK 567
            G  IL+ + V +PAAK ++++S TQD EVGDGTTSV VLA E+L  AE+ +N+  HP  I   Y +AL  A   L   ++    N R  +L + ++ +G+K  SQ  +  A LA+DA   +     +G   +D    I++ K  GG + +S + +G +  K    PG  + R++   +I++ ++P++  K
Sbjct:   64 GATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKKSSIESGDNIRDDLLKIARTTLGSKILSQHKEHFAQLAVDAVLRL-----KGSGNLDA---IQIIKKLGGSMNESYLDEGFLLEK---LPGMFQPRRVEKAKILIANTPMDTDK 242          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPZ_SCHPO (T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.030e-20
Identity = 61/230 (26.52%), Postives = 124/230 (53.91%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAELG*EEERGVMFENRKRISIQNPCMQIGKIKPDL 690
            G  +L E+ + +P A  + + +  QD+  GDGTTSV +L GE+L  AE +I +  HP++I   +N A  +A+  LD+     +  DR  +L + K+ + TK +S+  + LA   +DA  T+     +    +D+   +++ K+      D+++++G++ +     P  M +++ N  I++L+  LEY+K E ++       E+R  + E+ ++  + N   +I ++K ++
Sbjct:   58 GKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV-DREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTI----RRPDEPIDL-HMVEIMKMQNRSASDTQLIRGLLLDHGARHP-DMPKQVKNAYILILNVSLEYEKSEINSGFFYSTSEQRERLVESERKF-VDNKLRKIVELKKEV 279          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.030e-20
Identity = 60/201 (29.85%), Postives = 112/201 (55.72%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPI-DANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENSTNAEL 594
            G  +++ LD+ HPAA+++++++++QD EVGDGTTSV++LAGE L  A+ F+ +  HP +I RA+  A E A   +  +++ I   N R  +     + + +K  +      + + +DA   +  ++     ++D+   I ++K  GG L DS+ + G  F +     G  +  + I NP+++ L+  LE K  ++  NAE+
Sbjct:   65 GATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELSVDIKPENMREFLEKCASTSMNSKLIASHKQFFSKMVVDAVQLLDDNI-----DLDM---IGIKKESGGGLGDSQFIAGAAFKRTFFYAGFEQQPKHIKNPKVLCLNIELELKAEKD--NAEI 255          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.030e-20
Identity = 64/200 (32.00%), Postives = 112/200 (56.00%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVLDTIAMPID--ANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENSTNAEL 594
            G  IL  +DV +  AK ++ELSR+QD ++GDGTT V+V+AG +L  AE+ + +  HP  +   Y  A   AV  L++I+   +  A D   ++    + + +K  S+    LA++++ A   V  DL +    +D+   IKVE   GG+LED+ +++G++ +KD+  P +M ++I +  I +L  P E  K +     ++
Sbjct:   70 GATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATDIEPLVQTCMTTLSSKIVSRCKRALAEISVKAVLAV-ADLERKDVNLDL---IKVEGKVGGKLEDTELVEGIIVDKDMSHP-QMPKRIYDAHIAILTCPFEPPKPKTKHKVDI 264          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.030e-20
Identity = 61/193 (31.61%), Postives = 107/193 (55.44%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVL-DTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIK---KYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL+++D+ HPAAK +++LS  QD+EVGDGTT+V++LA E+L  A E + +  HPTVI   +  A  +A+  + +T+A+ ++   +  ++ + K+ + +K  +   D  + + I+A T V     +G    D+K     I + K  G   ++S +++G   N  V + G M ++I   +I  LD  L   K
Sbjct:   59 GATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDFIVNIAKTSMSSKTINDDSDFFSKIVIEAITRVKTIDYKG----DVKYPINAINILKAHGKSAKESTLVEGYALNCTVASEG-MPKRIQGAKIAFLDFNLAKTK 246          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.757e-20
Identity = 64/190 (33.68%), Postives = 101/190 (53.16%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVA-VLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A+L +DA   +     +G     +   I V K  G    +S ++ G   N  V + G M ++IVN +I  LD  L+  K
Sbjct:   58 GATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNS-INVLKAHGRSQMESMLINGYALNCVVGSQG-MPKRIVNAKIACLDFSLQKTK 245          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 1.757e-20
Identity = 62/190 (32.63%), Postives = 101/190 (53.16%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVL-DTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A++ +DA   V     +G     +   + + K  G    +S ++ G   N  V + G M ++IVN +I  LD  L+  K
Sbjct:   58 GATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELGRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARGQPRYPVNS-VNILKAHGRSQIESMLINGYALNCVVGSQG-MPKRIVNAKIACLDFSLQKTK 245          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.996e-20
Identity = 62/190 (32.63%), Postives = 103/190 (54.21%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVA-VLDTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL+ LDV HPAAK +++L++ QDEEVGDGTTSV++LA  +L  A+E I++  HPT +   Y  A  +A   + + +A  ++   +A ++ + ++ + +K  +   D+ + +A+DA   V V  G       IK  + + K  G  + +S ++ G   N    A  +M R I   +I  LD  L+  K
Sbjct:   55 GATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQEHMAYDVNKLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAVEVSGGPKGPVYPIKA-VNILKAHGRSMSESMLIDGYALN-CTAASQQMPRIIKKAKIAFLDFSLQKVK 242          
BLAST of DY270384 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.996e-20
Identity = 62/190 (32.63%), Postives = 101/190 (53.16%), Query Frame = 1
Query:    1 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFINKNYHPTVICRAYNKALEDAVAVL-DTIAMPIDANDRATVLGLVKSCIGTKFTSQFGDLLADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKK 567
            G  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT +   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A++ +DA   V     +G     +   + + K  G    +S ++ G   N  V + G ++R IVN +I  LD  L+  K
Sbjct:   58 GATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDIRGQPRYPVNS-VNILKAHGRSQIESMLINGYALNCVVGSQGMLKR-IVNAKIACLDFSLQKTK 245          
The following BLAST results are available for this feature:
BLAST of DY270384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPA_MONDO6.037e-2134.21T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPB_CAEEL7.885e-2133.68T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPZ_SCHPO1.030e-2026.52T-complex protein 1 subunit zeta OS=Schizosaccharo... [more]
TCPH_DICDI1.030e-2029.85T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPE1_AVESA1.030e-2032.00T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPA_DICDI1.030e-2031.61T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPA_BOVIN1.757e-2033.68T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPA2_MOUSE1.757e-2032.63T-complex protein 1 subunit alpha B OS=Mus musculu... [more]
TCPA_SCHMA2.996e-2032.63T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPA_RAT2.996e-2032.63T-complex protein 1 subunit alpha OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YH07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270384 ID=DY270384; Name=DY270384; organism=Citrus clementina; type=EST; length=1306bp
GGAAATGCTATTCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTC
AATGATTGAGTTAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAA
CATCTGTCATTGTGCTAGCTGGTGAGATGCTTCATGTTGCGGAAGAGTTC
ATCAACAAGAATTATCATCCTACGGTTATCTGTCGAGCTTACAATAAGGC
TTTGGAGGATGCTGTTGCTGTGCTTGATACAATTGCAATGCCCATCGATG
CAAATGATCGTGCAACAGTGTTGGGCCTGGTCAAGAGTTGCATTGGAACT
AAGTTCACAAGCCAATTTGGGGATCTGCTAGCTGATCTTGCAATTGATGC
CACCACTACTGTTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATA
TTAAGAAGTACATTAAAGTTGAGAAGGTCCCTGGTGGCCAGTTGGAAGAT
TCTAGGGTTCTGAAAGGAGTTATGTTCAACAAAGATGTTGTTGCCCCTGG
GAAAATGAGAAGAAAAATTGTCAACCCACGTATTATCCTTCTTGATTCTC
CCCTTGAGTACAAGAAAGGAGAGAATTCAACAAATGCTGAGTTGGGTTAA
GAAGAAGAACGGGGAGTCATGTTTGAAAATAGAAAGAGGATTTCCATCCA
AAACCCCTGCATGCAAATTGGGAAAATTAAACCCGACTTGATAATTTACA
AGAAAGGGTTCTATGCTCCTTGCCCGCCATTCTCTTAAACCAAGGCTGCA
CTTATGGCTCTTAGGATGCGCTGGGCCCACCGCCCTTATTTATTTCCCCC
ATGCCTGGGGGGGCCGTGCCTGGGACTCCTACCTGATCGATTAGAAGTTT
CTCGTGTTGGCGACGGGGCCCCGGCCTCTCTAGGGCGACTCACCACGGGG
CGATGTTCCTTGACGATCTAGATCGACTGAAAGAAATCCGACCACTTCGA
AGTCACCCCCCATATAACCATATCTAGGATCTCACCAAGCACTATATCTG
TGAACCACATGCAACGTCAGACACTCCCCCACGCCTATCCCAAAGACAAT
TCCCTAACTCAATTCACTCTTTTATCCTTAGCCTTTTTTTCATACAAATT
CTCTCCTCCACGAATAGTCCTTCATACCTCTTCTGTTCCAGTGTTGTCCA
ATGGATCCTAGTTATCGCCGAAGACACCAATGAGTTCTCTCCACTTTAAT
AACGAGTGACTGGTACGCATAATAAGGCAACTCTGACTGTGATCAAACTA
CGGCCACCATGAAACACCTGCACAAACTACATATTTCCATACGATCGATA
TTCTGA
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