DY270395

Overview
NameDY270395
Unique NameDY270395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1224
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig896 contig Ccv1_Contig896:275..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.151e-34
Identity = 69/116 (59.48%), Postives = 82/116 (70.69%), Query Frame = 2
Query:   41 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            YKGSTFHR+IP FM Q            +SIYGEKF DENF LKHT PG+LSMANAG +TNGSQFFI T  TSWLDG+HVVFG V  G+D++ KVE+ G  +G    K+ +AD G+
Sbjct:   48 YKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQ 163          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.963e-34
Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 2
Query:   41 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK 364
            YKGSTFHR+IPSFM Q            +SIYG +FPDENFKLKH GPG+LSMANAGP+TNGSQFFI T+ T WLDG+HVVFG V  GMDVV K+E+ G ++G    K
Sbjct:   91 YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKK 198          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 2.563e-34
Identity = 73/117 (62.39%), Postives = 84/117 (71.79%), Query Frame = 2
Query:   41 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSGE 388
            YK S FHR+I  FM+Q            +SIYGE+FPDENFKLKH GPG +SMANAG DTNGSQFFITTV TSWLDG+HVVFGKVL GMDVV KVE+ +      P   V++ DSG+
Sbjct:   88 YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGK 204          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 2.563e-34
Identity = 70/116 (60.34%), Postives = 81/116 (69.83%), Query Frame = 2
Query:   41 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFG V  GM++V  +E  G +NG    K+ +AD G+
Sbjct:   48 YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.563e-34
Identity = 70/119 (58.82%), Postives = 82/119 (68.91%), Query Frame = 2
Query:   32 PIHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            P+HYKGSTFHR+IP+FM Q            ESIYG KF DENF  +HTGPG+LSMANAG  TNGSQFFI T  T WLDG+HVVFGKV+ GM+VV  +E  G  +G     V +AD G+
Sbjct:   52 PLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQ 170          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.348e-34
Identity = 72/126 (57.14%), Postives = 84/126 (66.67%), Query Frame = 2
Query:   11 GSGFPLLPIHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            G+G    P+HYKGS FHRIIP FM Q            ESIYG KF DENF LKHTG G+LSMANAGP+TNGSQFFIT   T WLDG H VFG+++ G  V+  +E  G Q+G P +KV + D GE
Sbjct:   48 GTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGE 173          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 4.372e-34
Identity = 69/116 (59.48%), Postives = 81/116 (69.83%), Query Frame = 2
Query:   41 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 388
            YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFG+V  GM +V  +E  G +NG    K+ +A+ G+
Sbjct:   48 YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQ 163          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.458e-34
Identity = 73/117 (62.39%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   41 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVVADSGE 388
            Y+GS+FHRII +FM+Q            +SIYG KFPDENFKLKHTGPG+LSMANAG DTNGSQFFI TV T+WLD RHVVFG VL GMDVVY +E      G  P   + +A SGE
Sbjct:   95 YEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGE 211          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 7.458e-34
Identity = 76/129 (58.91%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    2 QPSGSGFPLLPIHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVVADSG 385
            +P G G+P       GS FHR+I  FM+Q             SIYGEKF DENFKLKH G G LSMANAG DTNGSQFFITTV T WLDGRHVVFGK+L GMDVV K+E   +  G  PK  V++A SG
Sbjct:   67 KPKGEGYP-------GSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASG 188          
BLAST of DY270395 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.458e-34
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 2
Query:   41 YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVVADSGE 388
            YKGSTFHR+I  FM+Q            +S+YG  F DENFKL H GPG+LSMANAGP+TNGSQFFI T+ TSWLDGRHVVFG+V+ GM+VV  +E +    G  P+ KVV+AD G+
Sbjct:  137 YKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQ 253          
The following BLAST results are available for this feature:
BLAST of DY270395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
PPIA_HEMPU1.151e-3459.48Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPIF_BOVIN1.963e-3463.89Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_MOUSE2.563e-3462.39Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIA_FELCA2.563e-3460.34Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
CYPH_LUPLU2.563e-3458.82Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CYP5_RHIOR3.348e-3457.14Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPIA_RABIT4.372e-3459.48Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIB_CRYNE7.458e-3462.39Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CYP5_CAEEL7.458e-3458.91Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CP20B_ARATH7.458e-3458.97Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270395 ID=DY270395; Name=DY270395; organism=Citrus clementina; type=EST; length=1224bp
ACAACCTTCTGGGAGTGGCTTCCCGCTCTTGCCAATCCACTACAAGGGAA
GTACGTTCCATAGGATTATTCCCAGCTTTATGCTTCAAGGAGGTGATTTC
ACTCTTGGTGATGGAAGAGGTGGAGAGTCAATTTATGGAGAGAAGTTCCC
TGACGAAAATTTCAAACTGAAGCACACTGGCCCAGGGCTTTTGTCAATGG
CAAATGCTGGTCCAGACACCAATGGTTCACAATTCTTCATTACAACTGTG
ACAACTAGCTGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTATC
GGGGATGGATGTAGTTTACAAGGTTGAAGCTGAAGGGAGGCAGAATGGCA
CTCCGAAGAGCAAAGTCGTCGTTGCAGACAGCGGTGAACTTCCTCTGTGA
TTTCCCCCATAATTATATAATTACGCTATACACCTTTTTAGTCCTCTCGT
CTTTTCAACCTTCATGAAGATACTCACAATTTGCCTATTTTATCATGTAA
TAAACATTTTCAATATGTCCTAGGTTGTTTGCCAAACTGGTGCCTCATTT
TCAAGGGGCATCCTTTCTCTGACCATCATAAAATAATAAAATGTACCCTA
TTTTCTTGGTCTATGTGGGCGCAGAAAAAAAGGCCCGGCCCATGGATTTT
GTAGAAACTCAAAGGCTATCCACAGACAAAAAAAAAACGTTTATCTAGAT
TTTGATATAATATCTCATGACTAAACGTATGCCGGTCGCTCCTGCTGCCT
CCTTTTTTTTCTTGATTCTCTATTCCTTTTTTTTTGCCACACCATCCTAC
TACTATACACTCCTATCCTCCTGTTACATATCACTACCACTAACTGACTC
ACTTTCCAAGCTCAAACATACACCAACTCCTATATTAATATCACATATAA
TATCCTAATCAGTAAACAAAAATTTTGACTCAAAGTTCACGGTATACATC
CACATATCGAAATATAAGAAATAAAAAGTTGTAGTTCTCCTACCCCACTC
CTGGTGCACCACTAGTTCTTTTTGTCGGACCTGCCTTCTATAACCCAGCC
TTGGCAGATGTGGGGTTCTTAGCCTTTGGTACCTGACGCCGTAGGGCTGT
CAGATACACTATACTCGCCTCCCATCATTTGATAGATTTGGAATTACATA
CGAACTGCAAGGTGTACTTTCATCTCCCATCCCCCCCCCCTGTCTACTAA
CACCATCCTCGCACCGCAATGTCA
back to top