DY270411

Overview
NameDY270411
Unique NameDY270411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1186
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270411_ssr663 microsatellite DY270411_ssr663:663..674. BLAST: Citrus ESTs to Prunus persica proteins V1
DY270411_ssr802 microsatellite DY270411_ssr802:802..813. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3611 contig Ccv1_Contig3611:1..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 2.515e-55
Identity = 110/152 (72.37%), Postives = 128/152 (84.21%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 557
            MGRG+VQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVA IVFS KGKL+EY+TDS M++ILERYERY YAE+ L + E E  GNW  EY KLKA++E +Q+  KH MGEDL  L+LKELQ +EQQ++S LK I SRK+ LML+SIS
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESIS 152          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.132e-47
Identity = 96/152 (63.16%), Postives = 121/152 (79.61%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 557
            MGRG VQL+RIENKINRQVTFSKRR+GLLKKAHEISVLCDA+VALIVFSTKGKL+E+S+ S ME ILERY+RY + ER +     E   NW  EY  LK++++ LQ++Q+  +GE L  L++KELQ +E Q++  LK IRS+KNQL+ +SIS
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESIS 152          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 1.132e-47
Identity = 96/152 (63.16%), Postives = 121/152 (79.61%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 557
            MGRG VQL+RIENKINRQVTFSKRR+GLLKKAHEISVLCDA+VALIVFSTKGKL+E+S+ S ME ILERY+RY + ER +     E   NW  EY  LK++++ LQ++Q+  +GE L  L++KELQ +E Q++  LK IRS+KNQL+ +SIS
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESIS 152          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 8.392e-43
Identity = 88/152 (57.89%), Postives = 116/152 (76.32%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 557
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALIVFS +GKL+E+ + SCM + LERY+R  Y   +      E   ++  EY KLKA+++VLQR+ ++ +GEDL +LS KEL+ +E Q+D  L+ IRS K Q ML  ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQ-EYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLA 151          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.870e-42
Identity = 88/151 (58.28%), Postives = 115/151 (76.16%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGRGRV+LKRIENKINRQVTFSKRR+GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ + + + + LERY+  CY   Q   N +    +W  E SKLKA+ E LQR Q+H +GEDL  LS+KELQ +E+Q++  L   R RK QLM++ +
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS-AGITKTLERYQHCCY-NAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQV 149          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.279e-42
Identity = 89/151 (58.94%), Postives = 114/151 (75.50%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGRG+V+LKRIENKI+RQVTF+KRR+GLLKKA+E+S+LCDAEVALI+FS +G+LFE+S+ SCM + LERY    Y  +   A E E N     EY KLK R+E LQ  Q++ +GEDL  LS+KEL+ +E QI+  LK IRSRKNQ +L  +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQ---EYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQL 148          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 9.279e-42
Identity = 89/151 (58.94%), Postives = 114/151 (75.50%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGRG+V+LKRIENKI+RQVTF+KRR+GLLKKA+E+S+LCDAEVALI+FS +G+LFE+S+ SCM + LERY    Y  +   A E E N     EY KLK R+E LQ  Q++ +GEDL  LS+KEL+ +E QI+  LK IRSRKNQ +L  +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQ---EYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQL 148          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.583e-41
Identity = 88/154 (57.14%), Postives = 117/154 (75.97%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA--ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 557
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ +   M R LERY+++ Y   +  +Q  E E   +   EY KLKAR+E LQR Q++ +GEDL  L +KEL+ +E+Q+DS L+ IRS + Q ML  ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLT 154          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.605e-41
Identity = 89/152 (58.55%), Postives = 114/152 (75.00%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQAN-EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGRG+V+LKRIENKI+RQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FST+G+LFE+ST SCM + LERY    Y     +A+  +E   +   EY KLK R+E LQ  Q++ +GEDL  LSLKEL+ +E QI+  L  IRS KNQ +L  +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQV 152          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.605e-41
Identity = 89/152 (58.55%), Postives = 114/152 (75.00%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQAN-EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGRG+V+LKRIENKI+RQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FST+G+LFE+ST SCM + LERY    Y     +A+  +E   +   EY KLK R+E LQ  Q++ +GEDL  LSLKEL+ +E QI+  L  IRS KNQ +L  +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQV 152          
The following BLAST results are available for this feature:
BLAST of DY270411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD15_ORYSJ2.515e-5572.37MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MAD18_ORYSJ1.132e-4763.16MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI1.132e-4763.16MADS-box transcription factor 18 OS=Oryza sativa s... [more]
CMB1_DIACA8.392e-4357.89MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS6_ORYSJ1.870e-4258.28MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MADS1_ORYSJ9.279e-4258.94MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI9.279e-4258.94MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS8_ORYSJ1.583e-4157.14MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MADS5_ORYSJ4.605e-4158.55MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI4.605e-4158.55MADS-box transcription factor 5 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YI12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270411 ID=DY270411; Name=DY270411; organism=Citrus clementina; type=EST; length=1186bp
CTCTTTTTCTATATTTGTACAGAGATTAGAGAGATACCCAGAAGAAGCCT
GCAAGTTTCTTTTGGAGAATTGCTGGTGATAATTATTAATAGATAGTTAA
TATGGGGAGAGGAAGGGTGCAGCTGAAGAGGATAGAGAACAAGATCAATA
GACAAGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAAGCCCAT
GAGATCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCTCCAC
TAAAGGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGAATCC
TTGAACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGCAAAT
GAGATTGAACCAAATGGAAACTGGACATTGGAATATTCCAAGCTTAAAGC
TAGGATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAGGATC
TTGCAGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGATTGAT
TCTGGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTCAATC
CATTTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAACAACT
TGCTTGCAAAGAAGGTAAAAGAAAAGGAGAAGCTACTGAGCCAAGAGGCG
CAGTGCAGGGAACAGCAGCAGCAGCTAAATCATGACTGGAACTCATCCAA
TGTTCATCTAATGCAGACATTGACCAATAAGCTCTTACCAAATGGGAGGG
GGCAGCGGAGAGGAGGATGAGGGAACTCCGACGGGAACTCAAGCTAACGC
TCTGCCTGCCTGCTTGGATGCCTCGTCCCCCTTCTTTATAATTTACCGAA
CAGGATTTCTTGATTTATAATCATATGTGCGAATTCAAATTTTGGCTAAG
GAAATTAAGCCGAAAAAAAAAATTGGATATATGGTTATGGAACAAGCCCT
CCTCTTTAACCTGTTTAATTTAAATGCCCCCGAGCCGGTAAAAAGGGGTT
GGTTTTATGTACACTTGGATCCTTTTGTATAAGGGGGATGGCCCCCCTTT
TCAAATATCCCCCCTTTTCCCCCTTTGGCTGGAACTTCTCCCTATGTTAT
AAAGGGGGAATGGAAACCCCCCCCAAAAAATTTTTAATTTATTGGTGTGG
GGGATCTTTTTTCAAAGGGGGAATAAACAAAACTCC
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