DY270411

Overview
NameDY270411
Unique NameDY270411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1186
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270411_ssr663 microsatellite DY270411_ssr663:663..674. BLAST: Citrus ESTs to Prunus persica proteins V1
DY270411_ssr802 microsatellite DY270411_ssr802:802..813. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3611 contig Ccv1_Contig3611:1..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.839e-28
Identity = 66/154 (42.86%), Postives = 106/154 (68.83%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYC--YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 557
            M RGR +LKRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIVFS +G+L+E+++   +++ ++RY+ Y   +   +    +I+   + TL  +K   ++E L  +++  +GE+L   S++EL+ +E +++  L  IR +K +L+ Q I+
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAK---KLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIA 151          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.839e-28
Identity = 68/151 (45.03%), Postives = 102/151 (67.55%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGRGRV+LK+IEN  NRQVTFSKRR GLLKKA+E+++LCDA++ +IVFS  GK++EYS+     RI   ++RY  A    +  E++       E +++K     L+   + +MG+DLA L+L+++ ++EQQI+  L  +R RK QL+ Q +
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPW--RIANIFDRYLKAP-STRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQL 148          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.839e-28
Identity = 73/151 (48.34%), Postives = 98/151 (64.90%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGRG++++KRIEN  +RQVTFSKRRSGLLKKA E+SVLCDAEVA+IVFS  GKLFEYS+   M++ L RY  +    +   A++ E +     E   LK ++  LQ       G+ L  L+ KELQS+EQQ+   L  +R RK +L+   +
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTG-MKQTLSRYGNH----QSSSASKAEED---CAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQL 143          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 2.898e-27
Identity = 65/154 (42.21%), Postives = 106/154 (68.83%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYC--YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 557
            M RGR +LKRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIVFS +G+L+E+++   +++ ++RY+ Y   +   +    +I+   + TL  +K   ++E L  +++  +GE+L   S++EL+ +E +++  L  IR +K +L+ + I+
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAK---KLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIA 151          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.785e-27
Identity = 63/151 (41.72%), Postives = 100/151 (66.23%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGRG++++KRI+N  +RQVTFSKRRSGL KKA E+S+LCDAEV L+VFS+  +L+++++ S M+ I+ERY        Q   N       W  E + L+ ++  LQ   +  +G+ L+ L +++LQ++E +++  LK IR RK+ +M+  I
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS-MKSIIERYNETKEDPHQTM-NASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQI 149          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 3.785e-27
Identity = 70/152 (46.05%), Postives = 101/152 (66.45%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSK-----LKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 542
            M RG+ ++KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALI+FS +GKL+E+S+ S + + +ERY      ++++Q        N   + SK     L  ++E L+ + +  MGE L   S++ELQ +E Q+D  L  IR++K QL+
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERY------QKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLL 146          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.101e-26
Identity = 67/162 (41.36%), Postives = 101/162 (62.35%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYC-----------YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            M RG++QLKRIEN ++RQVTF KRR+GLLKKA E+SVLCDAE+ +++FS +GKLFE +T   ME ++++Y +              A+ QLQ   ++P      E + LK  +E+LQ+   +  G     ++L+EL  +E+ ++  +  IRS K  +MLQ I
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKD----EINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEI 158          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.438e-26
Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEI---EPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGL 509
            MGRG++++KRIEN  NRQVTFSKRRSG+LKKA EISVLCDAEV +++FS+ GKL++Y S  + + RILE+Y        Q  + +I   E + + + E  ++K   + +Q   +H  GEDL  L  KEL  +E+ +D+G+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKY--------QTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGI 132          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.878e-26
Identity = 65/147 (44.22%), Postives = 102/147 (69.39%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 542
            MGRG++++KRIEN  NRQVT+SKRR+G+LKKA EISVLCDA V++I+F++ GK+ E+S+ S ++ IL++Y +     R+L   + E   N   E +K+K   + +Q   +H  GED+  L+ +EL  +E  +D+GL  IR+++N L+
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVD-ILDQYHK--LTGRRLWDAKHE---NLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLL 141          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.204e-26
Identity = 63/147 (42.86%), Postives = 102/147 (69.39%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 542
            MGRG++++KRIEN  NRQVT+SKRR+G+LKKA EISVLCDA V++I+F++ GK+ E+S+ S ++ IL++Y +     R L A     + N   E +K+K   + +Q   +H  GED+  L+ +EL  +E  +++GL  IR+++N+++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVD-ILDQYHKLT-GRRLLDAK----HENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVL 141          
The following BLAST results are available for this feature:
BLAST of DY270411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD56_ORYSJ5.839e-2842.86MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD31_ORYSJ5.839e-2845.03MADS-box transcription factor 31 OS=Oryza sativa s... [more]
AGL15_ARATH5.839e-2848.34Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD56_ORYSI2.898e-2742.21MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD23_ORYSJ3.785e-2741.72MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL14_ARATH3.785e-2746.05Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
AGL12_ARATH1.101e-2641.36Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MADS2_ORYSJ1.438e-2646.43MADS-box transcription factor 2 OS=Oryza sativa su... [more]
GLOB_TOBAC1.878e-2644.22Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY3.204e-2642.86Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YI12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270411 ID=DY270411; Name=DY270411; organism=Citrus clementina; type=EST; length=1186bp
CTCTTTTTCTATATTTGTACAGAGATTAGAGAGATACCCAGAAGAAGCCT
GCAAGTTTCTTTTGGAGAATTGCTGGTGATAATTATTAATAGATAGTTAA
TATGGGGAGAGGAAGGGTGCAGCTGAAGAGGATAGAGAACAAGATCAATA
GACAAGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAAGCCCAT
GAGATCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCTCCAC
TAAAGGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGAATCC
TTGAACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGCAAAT
GAGATTGAACCAAATGGAAACTGGACATTGGAATATTCCAAGCTTAAAGC
TAGGATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAGGATC
TTGCAGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGATTGAT
TCTGGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTCAATC
CATTTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAACAACT
TGCTTGCAAAGAAGGTAAAAGAAAAGGAGAAGCTACTGAGCCAAGAGGCG
CAGTGCAGGGAACAGCAGCAGCAGCTAAATCATGACTGGAACTCATCCAA
TGTTCATCTAATGCAGACATTGACCAATAAGCTCTTACCAAATGGGAGGG
GGCAGCGGAGAGGAGGATGAGGGAACTCCGACGGGAACTCAAGCTAACGC
TCTGCCTGCCTGCTTGGATGCCTCGTCCCCCTTCTTTATAATTTACCGAA
CAGGATTTCTTGATTTATAATCATATGTGCGAATTCAAATTTTGGCTAAG
GAAATTAAGCCGAAAAAAAAAATTGGATATATGGTTATGGAACAAGCCCT
CCTCTTTAACCTGTTTAATTTAAATGCCCCCGAGCCGGTAAAAAGGGGTT
GGTTTTATGTACACTTGGATCCTTTTGTATAAGGGGGATGGCCCCCCTTT
TCAAATATCCCCCCTTTTCCCCCTTTGGCTGGAACTTCTCCCTATGTTAT
AAAGGGGGAATGGAAACCCCCCCCAAAAAATTTTTAATTTATTGGTGTGG
GGGATCTTTTTTCAAAGGGGGAATAAACAAAACTCC
back to top