DY270411

Overview
NameDY270411
Unique NameDY270411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1186
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270411_ssr663 microsatellite DY270411_ssr663:663..674. BLAST: Citrus ESTs to Prunus persica proteins V1
DY270411_ssr802 microsatellite DY270411_ssr802:802..813. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3611 contig Ccv1_Contig3611:1..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 6.253e-22
Identity = 56/151 (37.09%), Postives = 101/151 (66.89%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGR +V++KRIENK +RQVTFSKRR+GL++KA ++S+LC++ +A++V S  GKL++ ++   M +I++RYE   +   +L+A ++      T  Y  LK  +E++Q   +     ++ + S+  L S+E+Q+++ L + R+RK +LM+  +
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE--IHHADELEALDLAEK---TRNYLPLKELLEIVQSKLEE---SNVDNASVDTLISLEEQLETALSVTRARKTELMMGEV 143          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.067e-21
Identity = 58/151 (38.41%), Postives = 101/151 (66.89%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            MGR ++++KRIENK +RQVTFSKRR+GL++KA ++SVLCDA VAL+V S  GKL+ +S+   + +IL+RY +  +A+  L+A + +      L Y    +  E+L+      +G ++ ++S+  L  +E+ +++ L + R++K +LML+ +
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQ-HAD-DLKALDHQSK---ALNYG---SHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLV 143          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.703e-19
Identity = 63/177 (35.59%), Postives = 100/177 (56.50%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWT----------------------LEYSKLKARMEVLQR---NQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 557
            M R R +++RIE+   RQVTFSKRR GL KKA E++VLCDA+VAL+VFS+ GKL ++++ S M  I+++Y  +    + L   + +P+ +                        LE+SK  +  E L       +   GE+L  LS++ELQ +E+ +++GL+ +   K+Q  +Q IS
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFAS-SNMNEIIDKYTTH---SKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEIS 173          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.954e-19
Identity = 53/151 (35.10%), Postives = 94/151 (62.25%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKAR-------MEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRK 530
            MGRG++++++IENK NRQVTFSKRR+G++KKA E++VLCDA+V+L++ S+  KL  Y S    ++++ + Y++            IE    W  ++ +++ +         +L+R     MG DL  L+L EL +++Q+++  +  IR++K
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQK------------IEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKK 139          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.211e-18
Identity = 48/128 (37.50%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  180 GLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSC-MERILERYERYCYAERQLQAN--EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 554
            GLLKKA E+++LCDA++ +I+FS+ GK+FE+S+    M  I++RY++       L  N   +  N     E +++K  ++ LQ   +HF GEDL  L++ E+  +EQQ++  +  +RSRK QL+ Q +
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK-------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQL 122          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.220e-17
Identity = 51/152 (33.55%), Postives = 89/152 (58.55%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY--STDSCMERILERYERYCYAE-----RQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQ 536
            MGRGR ++KRIEN   RQ TF KRR GL KKA E++VLCDA++ L++FS  GKL+ +   T   +   +ERYE   + +     RQ +  E+E          K+ +  ++L++  +    +D  + ++  L+++E  +++ ++ +RS K++
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELE----------KVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDR 142          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 6.696e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 320
            MGR ++Q+ RI ++ NRQVTF+KR+ G++KKA+E+SVLCD E+ALI+FS+  KL++Y STD  M+R+L +Y  Y
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTD--MDRVLLKYTEY 72          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.142e-15
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 320
            MGR ++Q++RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F+   KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.142e-15
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 320
            MGR ++Q++RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F+   KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of DY270411 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.142e-15
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  102 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 320
            MGR ++Q++RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F+   KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
The following BLAST results are available for this feature:
BLAST of DY270411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL31_ARATH6.253e-2237.09Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
FLC_ARATH1.067e-2138.41MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MAD55_ORYSJ1.703e-1935.59MADS-box transcription factor 55 OS=Oryza sativa s... [more]
CMB2_DIACA4.954e-1935.10MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AP32_ASAEU3.211e-1837.50MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MAD32_ORYSJ1.220e-1733.55MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2_DROME6.696e-1655.41Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA1.142e-1555.41Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT1.142e-1555.41Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE1.142e-1555.41Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YI12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270411 ID=DY270411; Name=DY270411; organism=Citrus clementina; type=EST; length=1186bp
CTCTTTTTCTATATTTGTACAGAGATTAGAGAGATACCCAGAAGAAGCCT
GCAAGTTTCTTTTGGAGAATTGCTGGTGATAATTATTAATAGATAGTTAA
TATGGGGAGAGGAAGGGTGCAGCTGAAGAGGATAGAGAACAAGATCAATA
GACAAGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAAGCCCAT
GAGATCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCTCCAC
TAAAGGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGAATCC
TTGAACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGCAAAT
GAGATTGAACCAAATGGAAACTGGACATTGGAATATTCCAAGCTTAAAGC
TAGGATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAGGATC
TTGCAGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGATTGAT
TCTGGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTCAATC
CATTTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAACAACT
TGCTTGCAAAGAAGGTAAAAGAAAAGGAGAAGCTACTGAGCCAAGAGGCG
CAGTGCAGGGAACAGCAGCAGCAGCTAAATCATGACTGGAACTCATCCAA
TGTTCATCTAATGCAGACATTGACCAATAAGCTCTTACCAAATGGGAGGG
GGCAGCGGAGAGGAGGATGAGGGAACTCCGACGGGAACTCAAGCTAACGC
TCTGCCTGCCTGCTTGGATGCCTCGTCCCCCTTCTTTATAATTTACCGAA
CAGGATTTCTTGATTTATAATCATATGTGCGAATTCAAATTTTGGCTAAG
GAAATTAAGCCGAAAAAAAAAATTGGATATATGGTTATGGAACAAGCCCT
CCTCTTTAACCTGTTTAATTTAAATGCCCCCGAGCCGGTAAAAAGGGGTT
GGTTTTATGTACACTTGGATCCTTTTGTATAAGGGGGATGGCCCCCCTTT
TCAAATATCCCCCCTTTTCCCCCTTTGGCTGGAACTTCTCCCTATGTTAT
AAAGGGGGAATGGAAACCCCCCCCAAAAAATTTTTAATTTATTGGTGTGG
GGGATCTTTTTTCAAAGGGGGAATAAACAAAACTCC
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