DY270412

Overview
NameDY270412
Unique NameDY270412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1245
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15333 contig Ccv1_Contig15333:229..1473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CAHC_HORVU (Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.520e-50
Identity = 101/180 (56.11%), Postives = 123/180 (68.33%), Query Frame = 2
Query:   50 FKKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLAAEGSTL*FPQWKI*T 589
            + K PD +  L  GQ+PK++VFAC+DSRVCPS  L  +P EAF +RNIANMVP Y + KY+G G+AIEYAV  LKVE IVVIGHS CGGIK L+S+ D    +  F+E+WV+I   AK KV+ EC  + F++QC   EKEAVNVSL NLLTYPFV+E V   TL   G    F   K  T
Sbjct:  142 YDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLKDGADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSGKFET 321          
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CYNT_SYNY3 (Carbonic anhydrase OS=Synechocystis sp. (strain PCC 6803) GN=icfA PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.635e-21
Identity = 55/169 (32.54%), Postives = 91/169 (53.85%), Query Frame = 2
Query:   47 FFKKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLAAEG 553
            +F  + DL+  L+ GQ P+ L   CSDSRV P+ I   +  + F++RN  N++PPY      G GAA+EYA++ L++  I+V GHS CG +KGL+ + ++       + +W+K   + +  V    + L  E+  +    E +   L NL TYP +   + +  L+  G
Sbjct:   15 YFSSHRDLFEQLSHGQHPRILFICCSDSRVDPNLITQSEVGDLFVIRNAGNIIPPYGAAN-GGEGAAMEYALVALEINQIIVCGHSHCGAMKGLLKL-NSLQEKLPLVYDWLKHTEATRRLVLDNYSHLEGEDLIEVAVAENILTQLKNLQTYPAIHSRLHRGDLSLHG 181          
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CYNT_HELPJ (Carbonic anhydrase OS=Helicobacter pylori J99 GN=cynT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.796e-20
Identity = 56/171 (32.75%), Postives = 92/171 (53.80%), Query Frame = 2
Query:   50 FKKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYS-GAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTA-SDFIEEWVKICSSAKSKVKKECN-DLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLAAEG 553
            +++  +LY +L   Q P  L  +C DSRV P+ I   QP E +++RN+ N++PP    K S    A++EYA+ H+ V+N+++ GHS CG    +  I D  T A + +I  W++     K ++K        F ++    E+    + L NLL+Y F++E V+ N L   G
Sbjct:   15 YEEFKELYESLKTKQKPHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCGACGSIHLIHDETTKAKTPYIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQERVINNELKIFG 185          
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CYNT_SYNE7 (Carbonic anhydrase OS=Synechococcus elongatus (strain PCC 7942) GN=icfA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.230e-20
Identity = 54/169 (31.95%), Postives = 88/169 (52.07%), Query Frame = 2
Query:   47 FFKKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLAAEG 553
            ++  + DL+   AKGQ P+ L   CSDSR+ P+ I      E F++RN  N++PP+      G GA+IEYA+  L +E++VV GHS CG +KGL+ + +        + +W++   + +  V    +    ++  +    E V   + NL TYP VR  + +  L   G
Sbjct:   15 YYPSHRDLFEQFAKGQHPRVLFITCSDSRIDPNLITQSGMGELFVIRNAGNLIPPFGAAN-GGEGASIEYAIAALNIEHVVVCGHSHCGAMKGLLKL-NQLQEDMPLVYDWLQHAQATRRLVLDNYSGYETDDLVEILVAENVLTQIENLKTYPIVRSRLFQGKLQIFG 181          
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CYNT_HELPY (Carbonic anhydrase OS=Helicobacter pylori GN=cynT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.831e-18
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 2
Query:   50 FKKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYS-GAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTA-SDFIEEWVKICSSAKSKVKKECN-DLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLAAEG 553
            +++  +LY +L   Q P  L  +C DSRV P+ I   +P E +++ N+ N+ PP    K S    A+IEYA+ H+ V+N+++ GHS CG    +  I D  T A + +I  W++     K ++K        F ++    E+    + L NLL+Y F++E   KN L   G
Sbjct:   15 YEELKELYESLKTKQKPHTLFISCVDSRVVPNLITGTKPGELYVICNMGNVNPPKTSYKESLSTIASIEYAIAHVGVQNLIICGHSDCGACGSVHLIHDETTKAKTPYIANWIQFLEPVKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQEKASKNELKIFG 185          
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CYNT_ECOLI (Carbonic anhydrase 1 OS=Escherichia coli (strain K12) GN=cynT PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.100e-16
Identity = 54/168 (32.14%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   50 FKKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLAAEG 553
            F K   L+  LA  QSP+ L  +CSDSR+ P  +   +P + F++RN  N+VP Y  +   G  A++EYAV  L+V +IV+ GHS CG +  + S        +  +  W++   SA+  V +         +     +E V   L NL T+P VR ++ +  +A  G
Sbjct:   16 FPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYGPEP-GGVSASVEYAVAALRVSDIVICGHSNCGAMTAIASCQCMDHMPA--VSHWLRYADSAR-VVNEARPHSDLPSKAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHG 179          
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CYNT_ECO57 (Carbonic anhydrase 1 OS=Escherichia coli O157:H7 GN=cynT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.100e-16
Identity = 54/168 (32.14%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   50 FKKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLAAEG 553
            F K   L+  LA  QSP+ L  +CSDSR+ P  +   +P + F++RN  N+VP Y  +   G  A++EYAV  L+V +IV+ GHS CG +  + S        +  +  W++   SA+  V +         +     +E V   L NL T+P VR ++ +  +A  G
Sbjct:   16 FPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYGPEP-GGVSASVEYAVAALRVSDIVICGHSNCGAMTAIASCQCMDHMPA--VSHWLRYADSAR-VVNEARPHSDLPSKAAAMVRENVIAQLANLQTHPSVRLALEEGRIALHG 179          
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CAN_EMENI (Carbonic anhydrase OS=Emericella nidulans GN=AN1805 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.588e-15
Identity = 53/152 (34.87%), Postives = 77/152 (50.66%), Query Frame = 2
Query:   59 NPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECN-------------DLSFEEQCKNCEKEAV 475
            +P+ +  LA GQSP++L   CSDSRV  + I+     E F+ RNIAN+VP  D    S     I YAV HLKV++IVV GH  CGG++  ++  D G      +  W++         +KE +             +L+  E C++  K AV
Sbjct:   36 DPEFFNKLAAGQSPEYLYIGCSDSRVPANEIMGLDAGEVFVHRNIANVVPTIDLSSMS----VINYAVGHLKVKHIVVCGHYNCGGVQAALTPTDLG-----ILNPWLRNIRDVYRLHEKELDAIEDDGERFNRLVELNVIESCRSVIKTAV 178          
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CYNT_PSEAE (Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cynT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.486e-13
Identity = 53/162 (32.72%), Postives = 80/162 (49.38%), Query Frame = 2
Query:   68 LYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLAAEG 553
            L+ +LA  Q+PK L  ACSDSRV P  +   +P E F++RN  N+VP Y  +   G  A++EYAV  L V +IVV GHS CG +  + S        +  +  W+    +A++ +       S   +     +  V   L NL T+P V  ++ +  L   G
Sbjct:   22 LFKSLATRQAPKALFIACSDSRVVPELLTQREPGELFVIRNAGNIVPGYGPQP-GGVSASVEYAVAVLGVGDIVVCGHSDCGAMGAIASCACLDQLPA--VAGWLHHAEAARA-MNSAHEHASEAARLDALVRHNVIAQLANLRTHPCVARALEQGRLNLHG 179          
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CAN_SCHPO (Carbonic anhydrase OS=Schizosaccharomyces pombe GN=SPBP8B7.05c PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.941e-13
Identity = 53/169 (31.36%), Postives = 85/169 (50.30%), Query Frame = 2
Query:   53 KKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLG--NLLTYPFVRESVVKNTLAAEG 553
            +K P  + A    Q+P+ L   CSDSRV  + ILN  P E F+ RNIAN+VP  D      A A +EY+V  LKV++I+V GH  CGG+   +     G   ++ ++ W++         ++E + +  + Q +  +   +N      ++    FVRE++ K  L   G
Sbjct:   57 RKYPSFFTATKDIQTPQVLWIGCSDSRVPETTILNLLPGEVFVHRNIANVVPRSD----INALAVMEYSVTVLKVKHIIVCGHYGCGGVAAAL-----GPNLNNLLDHWLRHIRDVIEDNREELDAIE-DPQLRRLKLAELNTRAQAISVTRVGFVREAMEKRGLQVHG 215          
The following BLAST results are available for this feature:
BLAST of DY270412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAHC_HORVU1.520e-5056.11Carbonic anhydrase, chloroplastic OS=Hordeum vulga... [more]
CYNT_SYNY35.635e-2132.54Carbonic anhydrase OS=Synechocystis sp. (strain PC... [more]
CYNT_HELPJ2.796e-2032.75Carbonic anhydrase OS=Helicobacter pylori J99 GN=c... [more]
CYNT_SYNE76.230e-2031.95Carbonic anhydrase OS=Synechococcus elongatus (str... [more]
CYNT_HELPY5.831e-1832.16Carbonic anhydrase OS=Helicobacter pylori GN=cynT ... [more]
CYNT_ECOLI1.100e-1632.14Carbonic anhydrase 1 OS=Escherichia coli (strain K... [more]
CYNT_ECO571.100e-1632.14Carbonic anhydrase 1 OS=Escherichia coli O157:H7 G... [more]
CAN_EMENI1.588e-1534.87Carbonic anhydrase OS=Emericella nidulans GN=AN180... [more]
CYNT_PSEAE1.486e-1332.72Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cy... [more]
CAN_SCHPO1.941e-1331.36Carbonic anhydrase OS=Schizosaccharomyces pombe GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YI13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270412 ID=DY270412; Name=DY270412; organism=Citrus clementina; type=EST; length=1245bp
GAAATTGTTCAGCCGATGGACGTGATCACTGATGCTTTGCCTTGTTTTTT
TCAAGAAGAATCCTGATTTGTACGGTGCACTGGCCAAAGGCCAAAGCCCC
AAGTTTCTGGTATTTGCATGCTCAGACTCTCGAGTATGTCCATCCCATAT
CCTCAATTTTCAACCAAGAGAGGCGTTTATGGTTCGAAACATTGCCAATA
TGGTCCCTCCATATGACCAGAAAAAATACTCTGGAGCAGGTGCAGCCATT
GAATATGCGGTGCTACATCTGAAGGTGGAGAATATTGTAGTCATTGGACA
CAGTTGCTGTGGTGGTATAAAGGGGCTCATGTCTATCCCTGATAATGGGA
CCACTGCGAGTGATTTCATAGAAGAGTGGGTCAAAATCTGTTCATCTGCC
AAGTCCAAGGTGAAAAAAGAATGCAATGATTTGAGTTTTGAGGAGCAATG
CAAGAACTGTGAAAAGGAGGCTGTGAATGTGTCCCTTGGAAACCTATTGA
CATACCCATTTGTGAGAGAGAGCGTGGTGAAGAACACCCTGGCCGCTGAA
GGGAGCACATTATGATTTCCTCAATGGAAAATTTGAACTTTGGGATCCTT
GACCTCCACATTTTACCTTCTGTACCTGGTCTGAGCCCTTGATGCATAAT
ACCCGGTTGCCCCAGCCTCCATGAATTTTCACAATTAAAGCCCATACTTG
AACTGTGCCTTTGTACTTGTGCCTTCTCCTCCTGAACACCAACACCACTT
CTCACCCTCTGGTATTTGGCCCAAATAATCCAACCGAGGGTTCCTATAAT
AACAAATTGAAAAGGAAAATTTCCCCTCCCGTAACACAAAAAACAAACAA
AAAAAATCAAACACATACTTGTGGGTAATAATCCTAGAACTACTAAAAAC
AAAATTCCTCCCCTTTTCCCCCCCACCACCCCCGAATCCACCCCTCCTAC
CCCCCCCAAAACCTACACCAATCACCCCCACTCAATATCCCCACTCAATA
ACTCCCTCTTCGACCTCCCCACCTACCCCCCACACTCCTCCCCTAACCTT
TTACTCCACCCAACAACCCTCTATATCCCATCGCCTCCCTCCTCATCAAT
CATCATACTACTACCCTCCACCATCATCCAACCTCCCTCCCCTCACCCCC
TTACATCTCTTTCCACTGCCCCCTCCCCCATTCCCTTATCACTATCATAC
TCTTAACTACTCATCTTCCCATTACCACTACTACGTTCTACATAC
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