DY270412

Overview
NameDY270412
Unique NameDY270412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1245
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15333 contig Ccv1_Contig15333:229..1473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CAN_SHIFL (Carbonic anhydrase 2 OS=Shigella flexneri GN=can PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.155e-12
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 2 
Query:   53 KKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 349
            +++P  +  LA+ Q P+FL   CSDSRV    +   +P E F+ RN+AN+V   D    S     ++YAV  L+VE+I++ GH  CGG++  +  P+ G
Sbjct:   20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG 114
[Close]
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CAN_ECOLI (Carbonic anhydrase 2 OS=Escherichia coli (strain K12) GN=can PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.155e-12
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 2 
Query:   53 KKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 349
            +++P  +  LA+ Q P+FL   CSDSRV    +   +P E F+ RN+AN+V   D    S     ++YAV  L+VE+I++ GH  CGG++  +  P+ G
Sbjct:   20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLS----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG 114
[Close]
BLAST of DY270412 vs. ExPASy Swiss-Prot
Match: CAN_HAEIN (Carbonic anhydrase 2 OS=Haemophilus influenzae GN=can PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.099e-11
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 2 
Query:   53 KKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPREAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 349
            ++N   +  LA  Q+P +L   CSDSRV    + N +P E F+ RN+AN V   D    S     ++YAV  LK+E+I++ GH+ CGGI   M+  D G
Sbjct:   20 EENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG 114
The following BLAST results are available for this feature:
BLAST of DY270412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAN_SHIFL8.155e-1237.37Carbonic anhydrase 2 OS=Shigella flexneri GN=can P... [more]
CAN_ECOLI8.155e-1237.37Carbonic anhydrase 2 OS=Escherichia coli (strain K... [more]
CAN_HAEIN3.099e-1139.39Carbonic anhydrase 2 OS=Haemophilus influenzae GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YI13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270412 ID=DY270412; Name=DY270412; organism=Citrus clementina; type=EST; length=1245bp
GAAATTGTTCAGCCGATGGACGTGATCACTGATGCTTTGCCTTGTTTTTT
TCAAGAAGAATCCTGATTTGTACGGTGCACTGGCCAAAGGCCAAAGCCCC
AAGTTTCTGGTATTTGCATGCTCAGACTCTCGAGTATGTCCATCCCATAT
CCTCAATTTTCAACCAAGAGAGGCGTTTATGGTTCGAAACATTGCCAATA
TGGTCCCTCCATATGACCAGAAAAAATACTCTGGAGCAGGTGCAGCCATT
GAATATGCGGTGCTACATCTGAAGGTGGAGAATATTGTAGTCATTGGACA
CAGTTGCTGTGGTGGTATAAAGGGGCTCATGTCTATCCCTGATAATGGGA
CCACTGCGAGTGATTTCATAGAAGAGTGGGTCAAAATCTGTTCATCTGCC
AAGTCCAAGGTGAAAAAAGAATGCAATGATTTGAGTTTTGAGGAGCAATG
CAAGAACTGTGAAAAGGAGGCTGTGAATGTGTCCCTTGGAAACCTATTGA
CATACCCATTTGTGAGAGAGAGCGTGGTGAAGAACACCCTGGCCGCTGAA
GGGAGCACATTATGATTTCCTCAATGGAAAATTTGAACTTTGGGATCCTT
GACCTCCACATTTTACCTTCTGTACCTGGTCTGAGCCCTTGATGCATAAT
ACCCGGTTGCCCCAGCCTCCATGAATTTTCACAATTAAAGCCCATACTTG
AACTGTGCCTTTGTACTTGTGCCTTCTCCTCCTGAACACCAACACCACTT
CTCACCCTCTGGTATTTGGCCCAAATAATCCAACCGAGGGTTCCTATAAT
AACAAATTGAAAAGGAAAATTTCCCCTCCCGTAACACAAAAAACAAACAA
AAAAAATCAAACACATACTTGTGGGTAATAATCCTAGAACTACTAAAAAC
AAAATTCCTCCCCTTTTCCCCCCCACCACCCCCGAATCCACCCCTCCTAC
CCCCCCCAAAACCTACACCAATCACCCCCACTCAATATCCCCACTCAATA
ACTCCCTCTTCGACCTCCCCACCTACCCCCCACACTCCTCCCCTAACCTT
TTACTCCACCCAACAACCCTCTATATCCCATCGCCTCCCTCCTCATCAAT
CATCATACTACTACCCTCCACCATCATCCAACCTCCCTCCCCTCACCCCC
TTACATCTCTTTCCACTGCCCCCTCCCCCATTCCCTTATCACTATCATAC
TCTTAACTACTCATCTTCCCATTACCACTACTACGTTCTACATAC
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