DY270414

Overview
NameDY270414
Unique NameDY270414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.344e-19
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 3
Query:  138 SSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKI-----------DPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPT 464
            S  S   F+ K + M++D     L+ W++ G SFIV N  +F   +LP+YFKH+NF+SFVRQLN YG+ K+             D+W+F NE FIRG+  LL+ I R+K   S++  SP+
Sbjct:  168 SHKSRPAFVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQKG-SSNNHNSPS 286          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSF_SCHPO (Heat shock factor protein OS=Schizosaccharomyces pombe GN=hsf1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 9.730e-19
Identity = 63/152 (41.45%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  129 GQGSSNSP--APFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQ------------WEFANEEFIRGQRHLLKNIHRRK----PVHSHSTQSPTPLTETERNEFEAKIERLKKENS 530
            G GSS +     F  K Y MV+D  T+SL+ WS  G SF+V    DFAK +LP+YFKHNNFSSFVRQLN YGF K+   Q             EFAN  F R Q  LL  + R+K    PV   +T        +E      +   L  E S
Sbjct:   41 GSGSSQNRKITQFSNKLYNMVNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQQGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKAGSQPVEESNTSLDMSTISSELQNIRIQQMNLSNELS 192          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSF3_CHICK (Heat shock factor protein 3 OS=Gallus gallus GN=HSF3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.168e-18
Identity = 52/150 (34.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  147 SPAP-FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKI-----------DPDQWEFANEEFIRGQRHLLKNIHRRKPV-----------HSHSTQSPTPLTETERNEFEAKIERLKKEN 527
            +P P FL K + +V+DP ++ ++ WS++G +F + +   FAK+LLP+YFKHNN SSF+RQLN YGFRK+                EF +  F +G  HLL+NI R+                H   S       ++N  + ++  +K+EN
Sbjct:   14 APVPGFLAKLWALVEDPQSDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFRKVVALENGMITAEKNSVIEFQHPFFKQGNAHLLENIKRKVSAVRTEDLKVCAEDLHKVLSEVQEMREQQNNMDIRLANMKREN 163          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.307e-18
Identity = 58/165 (35.15%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  120 ESQGQGSSNSPAP-------FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKI-----------DPDQWEFANEEFIRGQRHLLKNIHRR----KPVHSHSTQ-------SPTPLTETERNEFEAKIERLKKEN 527
            E Q Q  +  P P       FL K + +V +  +N L++WSQ+G SF+V +   FAK++LP+YFKHNN +SFVRQLN YGFRK+                EF +  F +G+  LL++I R+    +P  +  +Q       S     E ++   E+++  LK+EN
Sbjct:    4 EPQQQQPAQQPPPAGAGVPAFLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHVDSGIVKLERDGLVEFQHPYFKQGREDLLEHIKRKVSSSRPEENKISQEDLSKIISSAQKVEIKQETIESRLSALKREN 168          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 8.237e-18
Identity = 46/135 (34.07%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  138 SSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQ----------WEFANEEFIRGQRHLLKNIHRRKPVHSH-STQSPTPLTETERNEFEAKIE 509
            SSN  + F+ K + M+++P    ++ WS SG SFIV +  +F K +LP++FKH+NF+SFVRQLN Y F K+  ++          WEF +++F    + LL NI R+ P   + + ++  P+ E  + + ++ ++
Sbjct:    3 SSNGSSDFVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKVRHEEGAPSIYGEGAWEFRHDDFQLHHKDLLDNIKRKAPSKRNLANENTAPVIENLKQQVDSILD 137          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSF_KLULA (Heat shock factor protein OS=Kluyveromyces lactis GN=HSF PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.237e-18
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  159 FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKI-----------DPDQWEFANEEFIRGQRHLLKNIHRRK 431
            F+ K + MV+D      + WS SG S +V N   F +++LP+YFKH+NF+SFVRQLN YG+ K+           +  +WEF NE F RG+ +LL+NI R+K
Sbjct:  197 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENENFKRGKEYLLENIVRQK 298          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.189e-16
Identity = 53/152 (34.87%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  141 SNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKI----------DPDQWEFANEEFIRGQRHLLKNIHRR-------------KPVHSHSTQSPTPLTETERNEFEAKIERLKKEN 527
            S  PA FL K + +VDD  TN L+ W++ G SF++ N   FAK+LLP  +KHNN +SF+RQLN YGF KI          D D+ EF++  F R    LL  I R+             KP       +   +    ++  +++   +K+EN
Sbjct:   44 SGVPA-FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRKISNNKNGDDKGVLKPEAMSKILTDVKVMRGRQDNLDSRFSAMKQEN 194          
BLAST of DY270414 vs. ExPASy Swiss-Prot
Match: SKN7_YEAST (Transcription factor SKN7 OS=Saccharomyces cerevisiae GN=SKN7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.352e-11
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 3
Query:  123 SQGQGSSNSPA-PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKI--DPDQ----------WEFANEEFIRGQRHLLKNIHRRKP 434
            S     + +PA  F+ K + ++++     +V+W+++G SF+V +   F   +LP +FKH+NF+SFVRQLN Y F K+   P++          WEF + EF       L NI R+ P
Sbjct:   74 SSANAGAKAPANEFVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKVKRSPEERQRCKYGEQSWEFQHPEFRVHYGKGLDNIKRKIP 190          
The following BLAST results are available for this feature:
BLAST of DY270414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSF_YEAST3.344e-1941.67Heat shock factor protein OS=Saccharomyces cerevis... [more]
HSF_SCHPO9.730e-1941.45Heat shock factor protein OS=Schizosaccharomyces p... [more]
HSF3_CHICK2.168e-1834.67Heat shock factor protein 3 OS=Gallus gallus GN=HS... [more]
HSF2_CHICK6.307e-1835.15Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
PRR1_SCHPO8.237e-1834.07Transcription factor prr1 OS=Schizosaccharomyces p... [more]
HSF_KLULA8.237e-1844.12Heat shock factor protein OS=Kluyveromyces lactis ... [more]
HSF_DROME1.189e-1634.87Heat shock factor protein OS=Drosophila melanogast... [more]
SKN7_YEAST3.352e-1134.19Transcription factor SKN7 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YI16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270414 ID=DY270414; Name=DY270414; organism=Citrus clementina; type=EST; length=1316bp
CTTTGGTTTTCTTGTCGCAGCTTAGCTTTGTGCTGTAAAAGTTGTCAATA
TTGGACTGTTTGTATATGTAGGCTCTTGAAAGTTTAATAAATTTTCTTTC
GTAGAATTTAGTAATGGATGAATCACAGGGACAGGGTAGTTCAAATTCGC
CGGCACCTTTTCTCATCAAGACATATGAGATGGTGGATGATCCATTAACC
AACTCATTGGTGTCTTGGAGTCAAAGTGGCGGTAGTTTCATTGTCTGGAA
TCCCCCGGATTTTGCTAAAGATTTGCTGCCTCAGTACTTCAAGCACAATA
ATTTCTCCAGTTTTGTGAGGCAGCTGAATACATATGGATTCAGGAAGATT
GATCCTGATCAGTGGGAGTTTGCAAATGAGGAATTCATACGAGGACAGAG
GCATCTCTTAAAGAACATTCACAGACGCAAGCCAGTTCACAGCCATTCCA
CGCAGTCTCCCACTCCACTAACCGAAACGGAAAGAAATGAATTCGAGGCC
AAAATTGAGAGACTCAAAAAGGAGAATAGCTTACTTCAATTAGAGCTGCG
GAGGCGTGAGGGTGGAAATCACGAGTTTGAGTATCATGTTCAATCAGTAC
GCGAGCGTCTAAGGTACTTGGAAAATCGACAGACGCAAATGATCCCCTGT
TTAGCTAACCTGTTGAAAAAACCCGGGATTTTCCTCGGCTCCTAATCCAA
CAAGCAGAAGTTCACAGCAAAAAGAAAAAGCTGTTGAGGCCCTACGAATA
TTGAATAACTTTGATGGAGGTAAAATCCCCAGCCCTAAATTGTGAATGAA
AAGAAAAAAAAACCCCAAAAGCTAACTTCGAATCCACCCCCCGCGGTTGA
ATTTGAAAAAAATTGAACGGCCAAAATCCTCCGTGGAACTTTTGGGAACT
TTTTTTTGTACGGCCCTTGGGAAAGCTTTTTTATCCAACATGGATACTAA
TTTTCGAGAAATCACCACCCATCGCTCTGCGCCCCCCACAAAATACATAT
AAAAAACGGGGGGCCCAACTAAAAACAACTCAAAGAGTTTTTTTTATTGT
CTACTATCCCCCAAACCCCTTCGGTACGATCCCTTCACCCCCCCACCGCA
TCGAAATAACTACATACCAAAACAACACCCTGCGCGGGAAACCCTCAGCT
ATTCTCTCCATGCAATCATCAAAACAGCAATATACCTACATACAACAAAT
ATATATCAACCTATCTACTAATTAATTAATCGTTCATCCTAGCTGAGTGA
TGACCCATTCTCACTTAACATACGCCTTAATAACAACAATTGCCTGTGCC
AACCGATGAACACTAA
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