DY270428

Overview
NameDY270428
Unique NameDY270428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.700e-19
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP DSPY  GVF +T +F   YPF+  K  F
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.700e-19
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGPPDS Y  GVF +T +F   YPF+  K  F
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.700e-19
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGPPDS Y  GVF +T +F   YPF+  K  F
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.700e-19
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGPPDS Y  GVF +T +F   YPF+  K  F
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.267e-18
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPY  GVF +  +F   YPF+  K  F
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query:  181 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            +SKRI KEL DL++DPPTSCSAGPV +D++HWQA+IMGP DSPY  GVF ++ +F   YPF+  K  F
Sbjct:    3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISF 70          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI +EL DL KDPP+SCSAGPV +D+FHWQATIMGP DSPY  GVF ++ +F   YPF+  K  F
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY  GVF +T +F   YPF+  K  F
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY  GVF +T +F   YPF+  K  F
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY  GVF +T +F   YPF+  K  F
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAF 69          
The following BLAST results are available for this feature:
BLAST of DY270428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UB2D4_HUMAN9.700e-1965.22Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D1_MOUSE9.700e-1965.22Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN9.700e-1965.22Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN9.700e-1965.22Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC1_MAGGR1.267e-1865.22Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC4_YEAST2.161e-1861.76Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC4_SCHPO2.161e-1863.77Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UB2D3_RAT2.161e-1865.22Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB2.161e-1865.22Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE2.161e-1865.22Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270428 ID=DY270428; Name=DY270428; organism=Citrus clementina; type=EST; length=1311bp
CAAAGGCAAGACCTTTTAGAGGAGAGAGGTCGGGACGGCCAGTAGCCGCC
GCAGATCTGCTCCGAAGCCGTTCCCCTTTCTCACTGCTTTTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTGGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGTC
CGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGTTTGAGGTGTATTTTTGGTTACAAATTATTTTCGTCA
TTATTATCCCTTCAGGCGCCATAAAGGTCGCTTTTAGGAGCCCGGCCCGC
TGCCCAACCACCTACTGGCGCGCGACCAGTCCGCTTCGATTCACGTAAAG
ACCAGTATTCACACCTCTCTTTCCACTCCTAATGTCTCGCCATTCTATCT
GCGCGATACATCGGAGCAGTCTGAATAAGGAGCCTGTAGGTTGCGGGTCG
CGCCCCCCTCGCCCTCTCCATCCTTTCGCCTCCCTTCTACTTTCTTCTCT
TTCCTCTCCTCTTTGCTCCCCCATCCCCCCTTTGCTCCCCCTCATAGCGT
TCAAGTCCACCTCGTCGGGCAGGTTATTTGGTCATCTTTTTTGTTGTCTG
TGTTTCCCAGACGCAGTTGGCACCTTCTCCCCCCGGAGTCTAGCTGCGTC
TTTTCTCCGCCCTTCTCTACTAATTATCTTTTATTGCCACTTCAGGTATT
CTCGCCCTAATGGTCTGCTATTCTCCGGCTACAGTTCCCCTTCCCGTGCT
CGCAGGCATTGCCAGCCTCTTTTATTACCGCACGCGCATCGGGCCGTCCC
ATGTTTGCTGTCCGGTGCTATATCAGTTGGGTTATCGCTCTCTTTTCTCT
ATCCTTCTGTCGCTCCACACGCTGCGCCTTTAGTAGTCATTTGCCTTTAT
ATTTCTATTCTTATTCATCTCATTATCATTTCCAATAGCTCCGCTTTATG
TGACCAGGCTTTGCCGCCCTTCTTCCCCTCCTCTTCCGCGTTGCTTCTGC
TTTTCTCCTTTCTTTATATCACTTTTCTCTCCTCCGTTAATACTGCTCTC
TTCTTTATCTTTTGTACTCTCTACCGCCTGATTTCTCTGCCCCACCCCTC
TATGCTCGCACTCTCTCTCTTTCCGCTTTATCCGCTATCTCAACGCTGAT
CCAGCTGACCCCTCCTAATATCTAACCCCTAGTCTTGCCAACTGTAATAC
CTTCCTTCACT
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