DY270428

Overview
NameDY270428
Unique NameDY270428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270428_ssr1211 microsatellite DY270428_ssr1211:1211..1220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3616 contig Ccv1_Contig3616:1..1311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.211e-18
Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DL +DPP  CSAGPV EDMFHWQATIMGP DSPY  G F +T  F   YPF+  K  F
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.211e-18
Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MA KRI KEL DL +DPP  CSAGPV EDMFHWQATIMGP DSPY  G F +T  F   YPF+  K  F
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEF 69          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.401e-17
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  181 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            +SKRI KEL DL +DPP SCSAGPV +D++HWQA+IMGP DSPY  GVF ++ +F   YPF+  K  F
Sbjct:    3 SSKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNF 70          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.389e-17
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            MASKRI +EL+D+Q+ PP +CSAGPVAE D+FHWQATIMGP DSPY  GVF V+  F   YPF+  K  F
Sbjct:    1 MASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNF 70          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.120e-17
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHK 375
            M+ KRI KEL DL +DPP+SCSAGPV +D++HWQA+IMGPPDSPY  GVF ++ +F   YP +  K
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPK 66          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.341e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  181 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            ++KRI KEL D+  DPP +CSAGP  ++++ W++TI+GPP S Y  GVF +   F   YPF+  K  F
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTF 115          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.341e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  181 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            ++KRI KEL D+  DPP +CSAGP  ++++ W++TI+GPP S Y  GVF +   F   YPF+  K  F
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTF 115          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.700e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  181 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            ++KRI KEL ++  DPP +CSAGP  ++++ W +TI+GPP S Y  GVF +  +F   YPF+  K  F
Sbjct:   87 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTF 154          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.722e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  181 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y  GVF +   F   YPF+  K  F
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTF 129          
BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.722e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  181 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y  GVF +   F   YPF+  K  F
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTF 129          
The following BLAST results are available for this feature:
BLAST of DY270428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
U2D2B_RAT8.211e-1865.22Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE8.211e-1865.22Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC5_YEAST1.401e-1760.29Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC12_ARATH2.389e-1764.29Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC4_CANAL3.120e-1760.61Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2E1_MOUSE3.341e-1147.06Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN3.341e-1147.06Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBCD2_DROME5.700e-1145.59Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2E3_MOUSE9.722e-1145.59Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN9.722e-1145.59Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270428 ID=DY270428; Name=DY270428; organism=Citrus clementina; type=EST; length=1311bp
CAAAGGCAAGACCTTTTAGAGGAGAGAGGTCGGGACGGCCAGTAGCCGCC
GCAGATCTGCTCCGAAGCCGTTCCCCTTTCTCACTGCTTTTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTGGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGTC
CGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGTTTGAGGTGTATTTTTGGTTACAAATTATTTTCGTCA
TTATTATCCCTTCAGGCGCCATAAAGGTCGCTTTTAGGAGCCCGGCCCGC
TGCCCAACCACCTACTGGCGCGCGACCAGTCCGCTTCGATTCACGTAAAG
ACCAGTATTCACACCTCTCTTTCCACTCCTAATGTCTCGCCATTCTATCT
GCGCGATACATCGGAGCAGTCTGAATAAGGAGCCTGTAGGTTGCGGGTCG
CGCCCCCCTCGCCCTCTCCATCCTTTCGCCTCCCTTCTACTTTCTTCTCT
TTCCTCTCCTCTTTGCTCCCCCATCCCCCCTTTGCTCCCCCTCATAGCGT
TCAAGTCCACCTCGTCGGGCAGGTTATTTGGTCATCTTTTTTGTTGTCTG
TGTTTCCCAGACGCAGTTGGCACCTTCTCCCCCCGGAGTCTAGCTGCGTC
TTTTCTCCGCCCTTCTCTACTAATTATCTTTTATTGCCACTTCAGGTATT
CTCGCCCTAATGGTCTGCTATTCTCCGGCTACAGTTCCCCTTCCCGTGCT
CGCAGGCATTGCCAGCCTCTTTTATTACCGCACGCGCATCGGGCCGTCCC
ATGTTTGCTGTCCGGTGCTATATCAGTTGGGTTATCGCTCTCTTTTCTCT
ATCCTTCTGTCGCTCCACACGCTGCGCCTTTAGTAGTCATTTGCCTTTAT
ATTTCTATTCTTATTCATCTCATTATCATTTCCAATAGCTCCGCTTTATG
TGACCAGGCTTTGCCGCCCTTCTTCCCCTCCTCTTCCGCGTTGCTTCTGC
TTTTCTCCTTTCTTTATATCACTTTTCTCTCCTCCGTTAATACTGCTCTC
TTCTTTATCTTTTGTACTCTCTACCGCCTGATTTCTCTGCCCCACCCCTC
TATGCTCGCACTCTCTCTCTTTCCGCTTTATCCGCTATCTCAACGCTGAT
CCAGCTGACCCCTCCTAATATCTAACCCCTAGTCTTGCCAACTGTAATAC
CTTCCTTCACT
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