DY270428

Overview
NameDY270428
Unique NameDY270428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY270428 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.722e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:  181 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYV*GVFLVTNYFRHYYPFRRHKGRF 384
            ++KRI KEL ++  DPP +CSAGP  ++++ W++TI+GPP S Y  GVF +   F   YPF+  K  F
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTF 129
The following BLAST results are available for this feature:
BLAST of DY270428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UB2E3_BOVIN9.722e-1145.59Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270428 ID=DY270428; Name=DY270428; organism=Citrus clementina; type=EST; length=1311bp
CAAAGGCAAGACCTTTTAGAGGAGAGAGGTCGGGACGGCCAGTAGCCGCC
GCAGATCTGCTCCGAAGCCGTTCCCCTTTCTCACTGCTTTTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTGGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGTC
CGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGTTTGAGGTGTATTTTTGGTTACAAATTATTTTCGTCA
TTATTATCCCTTCAGGCGCCATAAAGGTCGCTTTTAGGAGCCCGGCCCGC
TGCCCAACCACCTACTGGCGCGCGACCAGTCCGCTTCGATTCACGTAAAG
ACCAGTATTCACACCTCTCTTTCCACTCCTAATGTCTCGCCATTCTATCT
GCGCGATACATCGGAGCAGTCTGAATAAGGAGCCTGTAGGTTGCGGGTCG
CGCCCCCCTCGCCCTCTCCATCCTTTCGCCTCCCTTCTACTTTCTTCTCT
TTCCTCTCCTCTTTGCTCCCCCATCCCCCCTTTGCTCCCCCTCATAGCGT
TCAAGTCCACCTCGTCGGGCAGGTTATTTGGTCATCTTTTTTGTTGTCTG
TGTTTCCCAGACGCAGTTGGCACCTTCTCCCCCCGGAGTCTAGCTGCGTC
TTTTCTCCGCCCTTCTCTACTAATTATCTTTTATTGCCACTTCAGGTATT
CTCGCCCTAATGGTCTGCTATTCTCCGGCTACAGTTCCCCTTCCCGTGCT
CGCAGGCATTGCCAGCCTCTTTTATTACCGCACGCGCATCGGGCCGTCCC
ATGTTTGCTGTCCGGTGCTATATCAGTTGGGTTATCGCTCTCTTTTCTCT
ATCCTTCTGTCGCTCCACACGCTGCGCCTTTAGTAGTCATTTGCCTTTAT
ATTTCTATTCTTATTCATCTCATTATCATTTCCAATAGCTCCGCTTTATG
TGACCAGGCTTTGCCGCCCTTCTTCCCCTCCTCTTCCGCGTTGCTTCTGC
TTTTCTCCTTTCTTTATATCACTTTTCTCTCCTCCGTTAATACTGCTCTC
TTCTTTATCTTTTGTACTCTCTACCGCCTGATTTCTCTGCCCCACCCCTC
TATGCTCGCACTCTCTCTCTTTCCGCTTTATCCGCTATCTCAACGCTGAT
CCAGCTGACCCCTCCTAATATCTAACCCCTAGTCTTGCCAACTGTAATAC
CTTCCTTCACT
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