DY270443

Overview
NameDY270443
Unique NameDY270443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1101
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY270443_ssr95 microsatellite DY270443_ssr95:95..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3624 contig Ccv1_Contig3624:1..1102. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKBP_ASHGO (FK506-binding protein 1 OS=Ashbya gossypii GN=FPR1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.813e-21
Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  295 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELL 561
            P+ GD V +HYTGTL +  +FDSS DR +PF+  +G G VIKGWD+ I  +  GE A  TIP   AYG  G P  IPPNATL F+VELL
Sbjct:   23 PKTGDLVTIHYTGTLENEQKFDSSVDRGSPFQCNIGVGQVIKGWDVAIPKLSVGEKARLTIPGAYAYGPRGFPGLIPPNATLIFEVELL 111          
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKB1B_MOUSE (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Mus musculus GN=Fkbp1b PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 4.813e-21
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  295 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 564
            P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T  P++AYG +G P  IPPNATL FDVELLS
Sbjct:   17 PKKGQICVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGTAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLS 106          
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKB1B_HUMAN (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Homo sapiens GN=FKBP1B PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 6.286e-21
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  295 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 564
            P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T  P++AYG +G P  IPPNATL FDVELL+
Sbjct:   17 PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLN 106          
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKB1B_BOVIN (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Bos taurus GN=FKBP1B PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 6.286e-21
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  295 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 564
            P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T  P++AYG +G P  IPPNATL FDVELL+
Sbjct:   17 PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLN 106          
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKBP4_DICDI (FK506-binding protein 4 OS=Dictyostelium discoideum GN=fkbp4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.072e-20
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  292 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 564
            +P++G +V V Y G L +G  FDSS    TPF F +G   VI+GWDIG+ +MK G     TIP +LAYG SG+PP+IPPNATL FDVEL+S
Sbjct:  273 SPKSGKKVGVKYIGKLTNGKTFDSSL--RTPFTFRIGIREVIRGWDIGVASMKVGGKRRLTIPADLAYGRSGAPPSIPPNATLIFDVELVS 361          
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKB1B_RAT (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Rattus norvegicus GN=Fkbp1b PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.072e-20
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  295 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 564
            P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T  P++AYG +G P  IPPNATL FDVELL+
Sbjct:   17 PKKGQICVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLN 106          
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKBP1_RHIOR (FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.400e-20
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  295 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELL 561
            P+ GD V +HYTGTL +G+ FDSS  R+ PF   +G G VIKGWD G+  +  G+ A     P+ AYG  G PP IPPNATL F+VELL
Sbjct:   17 PKKGDTVTMHYTGTLQNGSVFDSSVRRNEPFVTQIGVGRVIKGWDEGVLQLSLGQKANLICTPDYAYGPRGFPPVIPPNATLNFEVELL 105          
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKBP_NEIMC (FK506-binding protein OS=Neisseria meningitidis serogroup C GN=fbp PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.389e-20
Identity = 50/86 (58.14%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  304 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELL 561
            G E+ VHYTG L DGT+FDSS DR  P   TLG G VIKGWD G   MK+G     TIP E+ YG  G+   IPP+ATL F+VELL
Sbjct:   20 GKEITVHYTGWLEDGTKFDSSLDRRQPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGAHGAGGVIPPHATLIFEVELL 105          
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKB2B_RHIOR (FK506-binding protein 2B OS=Rhizopus oryzae GN=FKBP3 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.389e-20
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  301 NGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELL 561
            +GDE+ +HYTGTL D G +FDSS DR+ PF FTLG G VI+GWD G+  M  GE     IPP L YGE G+   IP  ATL F+VELL
Sbjct:   46 SGDELSMHYTGTLFDTGEKFDSSLDRNEPFVFTLGAGQVIQGWDQGLLGMCVGEKRRLVIPPHLGYGERGAGGVIPGGATLVFEVELL 133          
BLAST of DY270443 vs. ExPASy Swiss-Prot
Match: FKB1B_RABIT (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Oryctolagus cuniculus GN=FKBP1B PE=3 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 4.075e-20
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
Query:  295 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 564
            P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T  P++AYG +G P  IPPNATL F VELL+
Sbjct:   17 PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFGVELLN 106          
The following BLAST results are available for this feature:
BLAST of DY270443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
FKBP_ASHGO4.813e-2156.18FK506-binding protein 1 OS=Ashbya gossypii GN=FPR1... [more]
FKB1B_MOUSE4.813e-2155.56Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Mus ... [more]
FKB1B_HUMAN6.286e-2154.44Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Homo... [more]
FKB1B_BOVIN6.286e-2154.44Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Bos ... [more]
FKBP4_DICDI1.072e-2056.04FK506-binding protein 4 OS=Dictyostelium discoideu... [more]
FKB1B_RAT1.072e-2054.44Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Ratt... [more]
FKBP1_RHIOR1.400e-2053.93FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP... [more]
FKBP_NEIMC2.389e-2058.14FK506-binding protein OS=Neisseria meningitidis se... [more]
FKB2B_RHIOR2.389e-2057.95FK506-binding protein 2B OS=Rhizopus oryzae GN=FKB... [more]
FKB1B_RABIT4.075e-2053.33Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Oryc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YK01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270443 ID=DY270443; Name=DY270443; organism=Citrus clementina; type=EST; length=1101bp
CACAACAATAAAAGAGAGAGCCCAACCCCCTTTGTCTCTCAGCCTATAGC
GGATATCACTGTCGCACGCATTTAGCATTTCACATAATCAGCAGCTCTCT
CTCTCTCTCTCTCTCTTTCTCTCGTTCGTTAGAAGAAGATGGATGAGGAT
TTTGATATTCCAGCTGCGAATGAGATGGACGCGGACATGGATCTTCCCGA
CGATGCTCCCATGATGAAGGTTGGGGAGGAGAAGGAGATCGGTAATCAAG
GTTTGAAGAAGAAGCTTGTCAAGGAAGGCGAAGGCTGGGACACTCCTGAA
AATGGCGACGAAGTTGAAGTTCATTATACTGGAACGTTGCTGGATGGTAC
TCAGTTTGATTCCAGTCGTGATAGAAGCACTCCTTTTAAGTTCACGCTTG
GTCAAGGGAATGTGATTAAAGGATGGGACATAGGTATTAAGACTATGAAG
AAAGGTGAAAATGCTGTCTTCACCATTCCTCCTGAGCTTGCTTATGGTGA
ATCTGGTTCACCACCGACCATTCCTCCAAATGCCACTCTTCAGTTTGATG
TTGAATTACTATCTTGGACTAGTGTCAAGGACATTTGCAAGGACGGTGGG
ATTATTAAGAAGATCCTCAAGGAAGGAGAAAAATGGGAGAATCCCAGGAC
CTTGATGAAGTTCTCGTTAACTACGAAGCTAGACTTGAGGATGGTATGGG
TGTTGGAAAAGCAGATGGTGTAAAATTTCACGGTAAAGATGGTCATTTCT
GTCCCACTTTAACGAAAGGCTGAAAGAACAATGAAAAAGGGAAAAAAGGA
CCTTTTGGCGTGAAACCCCCAATTGGAATTGGGGGAAAAAGGAAATCGGC
CCCCGGGAACAAAGGGGCCTCCCCCCCAAAGGCAACCTTCCAATTGCGTT
TGGAATTATTTTCCGGGAAAAAGGGGTCCCAAAATCCCCGATAGAAAGAA
GGGGTTCTCCAAAAAATTTTAAAAAAAGGGGAAAGGGGTTTGAACCCCCC
ACGTGAAGGAACCTTTTTTTCCAAGTAAAATTATTATGGGAAAACCCCCC
CAAAATGGATCCCGGGTTTTTTTTACAAAAAAGGGCTTCCCAGCTGGAAA
A
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