DY270575

Overview
NameDY270575
Unique NameDY270575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1151
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270575 vs. ExPASy Swiss-Prot
Match: GUN13_ORYSJ (Endoglucanase 13 OS=Oryza sativa subsp. japonica GN=GLU6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.767e-11
Identity = 50/154 (32.47%), Postives = 67/154 (43.51%), Query Frame = 2 
Query:   44 VGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTEC---SSCSDXXXXXXXXXXXXXIVFKD-NKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTS-YWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNK 490
            VG GD+        DH CW R ED+   R   +    +  S+               FK  ++ YS  L+  +K LF F+   R +Y      A KFY S S Y DE +W  AWLY ATG+  YL+   +       G  W + +    SWDNK
Sbjct:  151 VGDGDS--------DHLCWERAEDMSTPRTAFKIDINNPGSEVAGETAAALAAAAKAFKPYDRMYSDLLLLHSKQLFTFADTFRGKYDDSLQSAKKFYPSASGYQDELLWAAAWLYEATGDEQYLRY-VSQNAEAFGGTGWAVTE---FSWDNK 292
[Close]
BLAST of DY270575 vs. ExPASy Swiss-Prot
Match: GUN13_ORYSI (Endoglucanase 13 OS=Oryza sativa subsp. indica GN=GLU6 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.767e-11
Identity = 50/154 (32.47%), Postives = 67/154 (43.51%), Query Frame = 2 
Query:   44 VGAGDTSGGSTTPNDHYCWMRPEDIDYDRPVTEC---SSCSDXXXXXXXXXXXXXIVFKD-NKAYSQKLVHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTS-YWDEFIWGGAWLYYATGNSSYLQLATTPGLGKHAGVFWGILDNSVLSWDNK 490
            VG GD+        DH CW R ED+   R   +    +  S+               FK  ++ YS  L+  +K LF F+   R +Y      A KFY S S Y DE +W  AWLY ATG+  YL+   +       G  W + +    SWDNK
Sbjct:  151 VGDGDS--------DHLCWERAEDMSTPRTAFKIDINNPGSEVAGETAAALAAAAKAFKPYDRMYSDLLLLHSKQLFTFADTFRGKYDDSLQSAKKFYPSASGYQDELLWAAAWLYEATGDEQYLRY-VSQNAEAFGGTGWAVTE---FSWDNK 292
The following BLAST results are available for this feature:
BLAST of DY270575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
GUN13_ORYSJ4.767e-1132.47Endoglucanase 13 OS=Oryza sativa subsp. japonica G... [more]
GUN13_ORYSI4.767e-1132.47Endoglucanase 13 OS=Oryza sativa subsp. indica GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YA16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270575 ID=DY270575; Name=DY270575; organism=Citrus clementina; type=EST; length=1151bp
GATCAAGTATGGAATAGCTCGTCTGATCCATTACCTTTTTTAGGTTGGTG
CTGGGGATACTTCAGGTGGGAGCACCACTCCCAATGATCATTATTGCTGG
ATGCGCCCTGAGGACATTGATTATGATAGACCTGTTACAGAATGTAGCAG
TTGTTCGGATCTCGCTGCTGAAATGGCTGCTTCTTTGGCTGCTGCCTCCA
TTGTTTTCAAAGACAACAAGGCCTACTCACAGAAGCTAGTCCATGGTGCC
AAAACCCTCTTTCAGTTTTCAAGGCAACAGCGAGCCAGATACAGTGCTGG
CAGTGCAGAAGCTGCTAAGTTCTATAATTCTACTAGTTACTGGGATGAGT
TTATTTGGGGTGGAGCTTGGTTGTACTATGCAACAGGGAATTCTTCCTAT
CTTCAGCTTGCTACTACTCCAGGTCTTGGAAAACATGCTGGTGTTTTCTG
GGGAATTCTGGACAACAGTGTTCTTAGCTGGGACAACAAGCTTGCTGGTG
CTGCACTGCTTTTGAGCCGATTGAGATTGTTCTTGAGCCCCGGATATCCC
TATGAAGAAATGTTGAGGACATTTCACAATCAAACCAGTATAACTATGTG
CTCTTACCTTCCGACTTTTACTACTTGGAATAGAACCAGAGGAGGCTTGA
TCCAATTAAACCATGGAAACCCGCACCCTCTGCCATACCTTGTCCATGCA
GCCCTCTTGGCCACCCTTATTAGTTGATTATCCTGATGCCGCTGATACAC
CTGGATGGTACTGTGGACCCCATTTCTTTCCACTTGATACTTTCGGGATT
TTGCCAGACTCAAATCAATTACCTCCTTGGTAAAAATCCCCCGAAAAAGA
GTTACATTGGGGGTTTTGGAAATCCTTACCCTAACATGTCCCCCAAGGGG
GTCCCTTCCAACCCAAAAAAAAAAAATCCAATCCCTTGTAAAAGGAGGGA
GGGAATTTGAAAGACCTCCCAAAAACCCAAACCCCAAAACAACTTTTGGG
GAACCCCTGGTTGTGTGGTCCCCAACAAACCCAAAAGGGTTCCCCTGGAA
TTTCTCTCTCTCTATTAAAAATATAAACAAACCCAATCCCTCCCCGGGCC
AATGCCCCGGTTTTTTTTTCCTCCCCCCTTGGGGGGTCTCTTTCCCGGTG
T
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