DY270584

Overview
NameDY270584
Unique NameDY270584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1125
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.856e-61
Identity = 128/265 (48.30%), Postives = 166/265 (62.64%), Query Frame = 1
Query:   19 GNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDG-----TAGDGGELG--KIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR-GK-YYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSPNDVNAGRLPGYGPTT 777
            G    G  CP   CCSR+GWCGLT D+C  GCQS C   V  +   DD      TA  GG  G   +++ + FE +L +R+D  CPAR FY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+ +EV  A+SD+C PN  +PC  GK Y+ RGP+Q+ +NYNY   GE +  G DLL NP+L+AT+      ++FK+A+W WMTA+ P +PS H V+  +W P+P D  AGR PGYG TT
Sbjct:   36 GRQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCR--VSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAI--GADLLGNPELVATDP----TVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTT 284          
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.417e-60
Identity = 117/203 (57.64%), Postives = 141/203 (69.46%), Query Frame = 1
Query:  181 GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSPNDVNAGRLPGYGPTT 777
            G +  I+SR  F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYCF +E G ASSDYC P+  +PC    +YYGRGPIQL+ NYNY   G  +  G DLL NPDL+AT+   G    FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G  T
Sbjct:   23 GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAI--GVDLLANPDLVATDATVG----FKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVIT 218          
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 5.385e-60
Identity = 126/301 (41.86%), Postives = 161/301 (53.49%), Query Frame = 1
Query:    7 GGSAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP----NYPCRGKYYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSPNDVNAGRLPGYGPTTI*STVKLIVPTVGMTPYLTLIGFLSPFVASLGIPPGDHL 894
            G  AGN      CP   CCS  G+CGLT+ +CC GC S C                         +  MFE +L  RN+  CP + FYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC   E+   +SDYCDP    +YPC   YYGRGP+QL WNYNY  CG  L  G++LL+ P+ +AT+     VLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G  T   T        G T     I +   +   L + PGD+L
Sbjct:   27 GSQAGNA----TCPNDLCCSSGGYCGLTVAYCCAGCVSQCRNC--------------------FFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELN-PNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYL--GQNLLDEPEKVATDP----VLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNL 296          
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.673e-59
Identity = 123/243 (50.62%), Postives = 153/243 (62.96%), Query Frame = 1
Query:  181 GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSPNDVNAGRLPGYGPTTI*STVKLIVPTVGMTPYLTLIGFLSPFVASLGIPPGDHLE 897
            G +  IIS   F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYCF +E GAA +DYC P+  +PC    +YYGRGPIQL+ NYNY   G  +  G DLL NPDL+AT+      +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G  T      L       +     IGF   +   LG+  GD+L+
Sbjct:   23 GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAA-ADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAI--GVDLLRNPDLVATDP----TVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLD 258          
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.016e-58
Identity = 116/241 (48.13%), Postives = 153/241 (63.49%), Query Frame = 1
Query:  187 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR--GKYYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSPNDVNAGRLPGYGPTTI*STVKLIVPTVGMTPYLTLIGFLSPFVASLGIPPGDHLE 897
            +  +IS+ +FE +L +RND+ C A+ FYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+NRE G +  DYC     +PC    KY+GRGPIQ+++NYNY   G  +  G +LLNNPDL+A +     V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G  T      +   +         IGF   +   LG+ PG++L+
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQG-SPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAI--GVNLLNNPDLVAND----AVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLD 238          
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 8.598e-58
Identity = 114/236 (48.31%), Postives = 149/236 (63.14%), Query Frame = 1
Query:  190 GKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSPNDVNAGRLPGYGPTTI*STVKLIVPTVGMTPYLTLIGFLSPFVASLGIPPGDHLE 897
            G I++RE+FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF R++  +             +YYGRGPIQLT   NY R G+ +G G+DL+NNPDL+AT+     ++SF++AIWFWMTAQ  KPSCH VII +W PSP D  A R+PGYG  T      L       T   + IGF   +   L +P G++L+
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDP----IISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLD 243          
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 7.278e-57
Identity = 109/205 (53.17%), Postives = 138/205 (67.32%), Query Frame = 1
Query:  163 GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSPNDVNAGRLPGYGPTT 777
            G +G    +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC   E+            P    YYGRGPIQLT  YNY   G+ LG   DL+NNPDL++++     V++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG  T
Sbjct:   19 GASGQQAGVGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEI-----------TPSDPPYYGRGPIQLTHKYNYQLAGDALGL--DLVNNPDLVSSDP----VVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMAT 205          
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 9.506e-57
Identity = 111/236 (47.03%), Postives = 148/236 (62.71%), Query Frame = 1
Query:  190 GKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSPNDVNAGRLPGYGPTTI*STVKLIVPTVGMTPYLTLIGFLSPFVASLGIPPGDHLE 897
            G I++RE+FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF +++  +             +YYGRGPIQLT   NY R G+ +G G++L+NNPDL+AT+     ++SFK+AIWFWMT Q  KPSCH VII +W PSP D  A R+PGYG  T     +        T   + IGF   +   L +P G++L+
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDP----IISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLD 243          
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.678e-53
Identity = 116/243 (47.74%), Postives = 151/243 (62.14%), Query Frame = 1
Query:  184 ELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSPNDVNAGRLPGYGPTTI*STVKLIVPTV----GMTPYL-TLIGFLSPFVASLGIPPGDHLE 897
            ++G I++ ++F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYCF RE     S            +YGRGPIQLT   NY   G+ +  G+DL+NNPDL+AT+      +SFK+AIWFWMTAQ  KPSCH+VI  +W PS  D +A R PGYG  T      +I   +    G  P +   IGF   +   L + PGD+L+
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-----------FYGRGPIQLTGQSNYDLAGQAI--GQDLVNNPDLVATD----ATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVIT-----NIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLD 237          
BLAST of DY270584 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.868e-50
Identity = 110/237 (46.41%), Postives = 143/237 (60.34%), Query Frame = 1
Query:  187 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGERLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSPNDVNAGRLPGYGPTTI*STVKLIVPTVGMTPYLTLIGFLSPFVASLGIPPGDHLE 897
            +G I++ ++F+ +L+ RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF RE     +            YYGRGPIQLT   NY   G+ +   +DL+NNPDL+AT+      +SFK+AIWFWMT Q  KPSCH+VI   W PS  D +A R+PGYG  T      +             IG+    V+ + + PGD+L+
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-----------YYGRGPIQLTGQSNYDLAGKAI--EQDLVNNPDLVATD----ATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLD 244          
The following BLAST results are available for this feature:
BLAST of DY270584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI7_ORYSI2.856e-6148.30Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI2_HORVU2.417e-6057.6426 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI8_POPTR5.385e-6041.86Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIC_SECCE2.673e-5950.62Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHID_SOLLC1.016e-5848.13Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIA_SOLCI8.598e-5848.31Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI11_ORYSJ7.278e-5753.17Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC9.506e-5747.03Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_SOLLC1.678e-5347.74Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY3.868e-5046.41Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YB06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270584 ID=DY270584; Name=DY270584; organism=Citrus clementina; type=EST; length=1125bp
GTACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGG
AGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAATAGACCACT
GTTGTGACGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGT
GATCCCGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCAT
CTCAAGGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGAT
GCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAA
GCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGA
AATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGC
CCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAA
GTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGG
GAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACT
TACGGTGCGGAGAACGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCA
GACCTTCTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTC
AGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACG
AAGTCATTATCGACGAATGGAAACCATCACCCAATGACGTAAACGCCGGC
CGGCTTCCGGGATACGGTCCAACCACAATATAATCAACCGTGAAATTGAT
TGTGCCTACGGTGGGAATGACCCCGTACCTAACCCTAATTGGGTTCCTTT
CCCCTTTCGTGGCCAGTTTGGGGATTCCCCCTGGTGACCATCTTGAATTG
CCTCCACCAACCGGCCCTATGGCCCTTAATCGGATGGCCCAATCCTATGT
AATCCTAATGAATCCAACTTTTAAAAAAATAAGCCTTAATAAAAGCCCCC
TTAAAAAAAAACTTTTAAATGGCCCCCTCTGTTGGGTGGAAAACCAAACC
CGTTTCCCCCCTTATTTTAAAGTAAAAAAAAATAAAAACCCAACCCCACC
CGGGAACACCTCAAGCCTCCCCCCC
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