DY270590

Overview
NameDY270590
Unique NameDY270590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1209
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270590 vs. ExPASy Swiss-Prot
Match: GBB3_TOBAC (Guanine nucleotide-binding protein subunit beta OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.698e-11
Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = 1
Query:  181 AGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQT-PMFTCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG-------KPSGNPLIGHKKWITGISWEPVHLNAPCRRFVSANKDGDARIWDVSLRKCVICLSG----HTLAVTCVKWGGDG-VIYTGSQDCTIKVW 666
            +GHT  V SV+ S    +L  SGS DTT RLWD    +    T  GH+  V  + +  DG    +GS+ G  + +D +TG       +P G+  I H   +T +++     +   R       +GD  +WD  L K V+ L G    H   ++C+    DG  + TGS D  +K+W
Sbjct:  201 SGHTADVQSVSISSSNPRLFVSGSCDTTARLWDNRVASRAQRTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYYQPHGDGDIPH---VTSMAF-----SISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLSADGSALCTGSWDTNLKIW 368          
BLAST of DY270590 vs. ExPASy Swiss-Prot
Match: CIAO1_NEMVE (Probable cytosolic iron-sulfur protein assembly protein OS=Nematostella vectensis GN=v1g226592 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.698e-11
Identity = 64/230 (27.83%), Postives = 98/230 (42.61%), Query Frame = 1
Query:  178 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFTC-----TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-PLIGHKKWITGISWE-PVHLNAPCRRFVSANKDGDARIWDV---SLRKCVICLSGHTLAVTCVKW-GGDGVIYTGSQDCTIKVWETTQG--KLIRELKGHGHWVTSLALSPEYAPRTEAFDHTGKTVFLS*RNEKSRFWK 828
            + GH + V SVA+SP+G  LAS  GD T+R+W    +   + C      GH+  +  + WS  G  L S S       WD ++G+   N  L GH+  +  + W     L A C R      D    IW+V      +C   +  HT  V  V W     ++ + S D TIK+++  +        L+GH   V S+           +FD +G  +     ++  R WK
Sbjct:    1 MTGHEDRVWSVAWSPNGFVLASCGGDKTIRIW--GKEGDKWICKTILEDGHQRTIRSLGWSPCGTFLASASFDATTCIWDQKSGEFECNATLEGHENEVKSVDWSVSGSLLATCGR------DKSVWIWEVQEDDEYECASVIHSHTQDVKKVVWHPTKEILASCSYDDTIKLYKEDEDDWSCCDTLEGHESTVWSI-----------SFDGSGDRIVSCSDDKTVRIWK 211          
BLAST of DY270590 vs. ExPASy Swiss-Prot
Match: WDR1_RAT (WD repeat-containing protein 1 OS=Rattus norvegicus GN=Wdr1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 8.748e-11
Identity = 57/205 (27.80%), Postives = 87/205 (42.44%), Query Frame = 1
Query:  136 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFTCTG---HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-----PSGNPLIGHKKWITGISWEPVHLNAPCRRFVSANKDGDARIWDV-SLRKCVICLSGHTLAVTCV---KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH 714
            A F   P  +   TI  H+  V  V FSPDG + A+ S D  + ++D  T   +    G   H   +  I+WS D  HL+S S     + WD          P G+ ++  +    G  W+  HL       +S +  G     D  +  K +  + GH+ ++ C+   K GG   IY+GS D  I  W++  G+      G GH
Sbjct:  171 AAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKIWDVNVNSVVSTFPMGSNVLDQQ---LGCLWQKDHL-------LSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGE-NDSFSGKGH 364          
BLAST of DY270590 vs. ExPASy Swiss-Prot
Match: WDR12_DROVI (Ribosome biogenesis protein WDR12 homolog OS=Drosophila virilis GN=GJ17641 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.748e-11
Identity = 59/217 (27.19%), Postives = 93/217 (42.86%), Query Frame = 1
Query:  166 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW----------------DLNTQTPMFTCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLIGHKKWITGISWEPVHLNAPCRRFVSANKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVTSLALS-PEY 747
            C +   GH   V SV  SPD ++ A+GS DT +++W                +   +TP  T  GH+  +  + W  D   LV+GS    L+ WD Q         I   K I   S+  ++     R  V+A+ D + R++D    +  +  +   GH   V  V W    + +  +GS D   K+W+    K  + +L GHG  V  +  S P+Y
Sbjct:  185 CVSVCKGHERGVDSVCVSPDAQRFATGSWDTMLKIWSAGLDDTSEGTAKRVKESGVRTPKMTLQGHRESISAVQW-MDATTLVTGSWDHTLKVWDLQL--EGIKTEISTNKSIFDASYSKLN-----RLIVTASADKNLRLYDARTNQGSVVRNTYLGHNAWVQTVMWSNTEEFLFVSGSYDTQNKLWDCRSPKAPLYDLLGHGEKVLDIDWSNPKY 393          
BLAST of DY270590 vs. ExPASy Swiss-Prot
Match: TIPD_DICDI (Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.748e-11
Identity = 50/206 (24.27%), Postives = 96/206 (46.60%), Query Frame = 1
Query:  184 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFTCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLIGHKKWITGISWEPVHLNAPCRRFVSANKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG-HGHWVTSLALSPEYAPR--TEAFDHTGKTV 789
            GH   +  +AF+  G  LA+G GD  V++WD+ +     T  G    ++ +++S + + ++  S     + W+ + G+ S + L GH     G  +    +N+   R V+ + D   ++WD+    C   +   +     V  GG G  + +G  D +++ W++  G+  + L   H   +TS+  SP    +  T + DHT K +
Sbjct:  322 GHNSEIYCMAFNSIGNLLATGGGDKCVKVWDVISGQQKSTLLGASQSIVSVSFSPNDESILGTSNDNSARLWNTELGR-SRHTLTGH----IGKVYTGKFINS--NRVVTGSHDRTIKLWDLQKGYCTRTIFCFSSCNDLVILGGSGTHLASGHVDHSVRFWDSNAGEPTQVLSSIHEGQITSITNSPTNTNQILTNSRDHTLKII 520          
BLAST of DY270590 vs. ExPASy Swiss-Prot
Match: PWP2_YEAST (Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae GN=PWP2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 8.748e-11
Identity = 44/168 (26.19%), Postives = 81/168 (48.21%), Query Frame = 1
Query:  184 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFTCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLIGHKKWITGISWEPVHLNA----PCRRFVSANK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVW 666
            GH ++  S+A+SPDG ++ + S D  +++WD+ +   + T   H + V  + ++  G+ + S S  G ++ WD          LI ++ + T    E +  N     P    V A    + D  +W V   + +  LSGH   V+C+ +  +  V+ + S D TI++W
Sbjct:  343 GHFDSTNSLAYSPDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWD----------LIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSVQTGQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIW 500          
BLAST of DY270590 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.748e-11
Identity = 60/251 (23.90%), Postives = 106/251 (42.23%), Query Frame = 1
Query:   31 AFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFTCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLIGHKKWITGISWEPVHLNAPCRRFVSANKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVTSLALSPEYAPRTEAFDHTG 780
            A ++  H   +P    L+       K+L+       V   +   +  AT+ GHT+ V SV F P    + S S D T+R+W +   + +     H++ V  ++  A G +L+S S        D QTG+     L       +G S      +     F +   D   +IWD+  R  V    GH+  +T + +  +G  + T + D ++K+W+      +R+LK       +L L   +  ++  FD +G
Sbjct:  211 ASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGR----VLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD------LRKLKN----FKTLQLDNNFEVKSLIFDQSG 447          
The following BLAST results are available for this feature:
BLAST of DY270590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
GBB3_TOBAC6.698e-1131.25Guanine nucleotide-binding protein subunit beta OS... [more]
CIAO1_NEMVE6.698e-1127.83Probable cytosolic iron-sulfur protein assembly pr... [more]
WDR1_RAT8.748e-1127.80WD repeat-containing protein 1 OS=Rattus norvegicu... [more]
WDR12_DROVI8.748e-1127.19Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
TIPD_DICDI8.748e-1124.27Protein tipD OS=Dictyostelium discoideum GN=tipD P... [more]
PWP2_YEAST8.748e-1126.19Periodic tryptophan protein 2 OS=Saccharomyces cer... [more]
PRP19_BOVIN8.748e-1123.90Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YB14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270590 ID=DY270590; Name=DY270590; organism=Citrus clementina; type=EST; length=1209bp
CTTCTCAATAATGATGAGAAGTTACCGTATGCTTTTTATATATCAGACCA
TGAGCTTCTGGTGCCACTTGGAAGCTACTTAGAGAAACATAAAGTTTCTG
TGGAGAAGGTGTTGTCGATAGTTTATCAACCACAAGCTGTTTTCAGAATT
CGTCCGGTTAATCGTTGTTCAGCTACTATTGCTGGTCATACAGAAGCTGT
ACTTTCAGTAGCCTTTAGTCCTGATGGGCGACAGTTGGCCAGTGGTTCTG
GTGATACCACCGTCCGACTATGGGACCTTAATACCCAGACGCCAATGTTC
ACATGTACAGGACACAAGAATTGGGTTCTGTGTATAGCATGGTCTGCTGA
TGGTAAGCATCTAGTTAGTGGGAGCAAGGCCGGAGAACTTCAATGTTGGG
ATCCCCAGACAGGAAAGCCATCAGGCAATCCACTCATTGGCCACAAGAAA
TGGATTACTGGTATCTCTTGGGAGCCAGTCCATCTGAATGCTCCTTGTCG
TCGCTTTGTAAGTGCTAACAAAGATGGAGATGCACGTATATGGGATGTTT
CATTGCGAAAATGTGTTATTTGTCTTAGCGGGCACACGCTTGCAGTGACT
TGTGTGAAATGGGGTGGCGATGGAGTGATTTACACAGGTTCACAGGACTG
TACTATAAAAGTTTGGGAAACTACGCAAGGGAAGCTGATTCGTGAATTGA
AGGGTCACGGACATTGGGTCACCTCCCTTGCATTGAGCCCCGAATATGCT
CCTCGCACGGAAGCTTTTGATCATACAGGGAAAACGGTATTCCTCTCCTG
AAGGAATGAAAAAAGCCGCTTCTGGAAAGGTATAACAAAATTAAAAGGAA
TGGCTCCCGAAAAATTGGTATCCGGATCTGATGAATTTACAAGGTTCCTC
CTGGAACCCTGCCGTTAACCAACCACCCTAAAACTCCAAAGGGGGGGTCC
TTCAACAACCTTGAAAACCCAGTTTTTTTTTTCCCCTTAAACGGGCAATG
GGGGGCCAAGCCCCCTCATTTGAAAAACCTCCAATAACCGTTATGGAAAA
GGGAAAACAACGGAAAAATTTTTGTTGGTGGCTTTTCCCGGGGGCAACTT
TTTGGGGGCCGCGTTTTTATACAATCGCCCCCGGTCCCCGTGCAGAAAAC
ATAGCTCCTCTCCTCCCACGGGGGGGGGAAAACAAACCAAACCCCCCACT
ACTTGATGG
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