DY270605

Overview
NameDY270605
Unique NameDY270605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1231
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270605 vs. ExPASy Swiss-Prot
Match: VATC_DROME (V-type proton ATPase subunit C OS=Drosophila melanogaster GN=Vha44 PE=1 SV=5)

HSP 1 Score: 137.887 bits (346), Expect = 1.199e-31
Identity = 78/226 (34.51%), Postives = 118/226 (52.21%), Query Frame = 3
Query:  312 YLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPTSSKLLYEENEYALYTVTLFGPC*DNFRIPAREKGFQXXXXXXXXXXXXXXXXXXXXIFPHQKNLDNSPFAWCQYPYGQVFSSRHPFCAVPFFEKTFLKKGLAPLFLGLVSTPPPK 986
            YLTRF WD AKYP    LR I D I   + +I+ DLK +   YNN++  L  + +K++GSL  R+L++LVK E  I+ SE+L TLL +VPK    DWL +YE +T  +VP SS+L+ E+ +Y L+ VTLF    + F++ ARE+ F                     +   +K        W +  + + F +     A+  F ++ L+ GL   F  ++  P  K
Sbjct:  550 YLTRFQWDMAKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGNLQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNYEKITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVRDFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKALRVFVESVLRYGLPVNFQAILIEPNKK 775          
BLAST of DY270605 vs. ExPASy Swiss-Prot
Match: VATC_YEAST (V-type proton ATPase subunit C OS=Saccharomyces cerevisiae GN=VMA5 PE=1 SV=4)

HSP 1 Score: 123.25 bits (308), Expect = 3.056e-27
Identity = 81/288 (28.12%), Postives = 136/288 (47.22%), Query Frame = 3
Query:  126 FNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPTSSKLLYEENEYALYTVTLFGPC*DNFRIPAREKGFQXXXXXXXXXXXXXXXXXXXXIFPHQKNLDNSPFAWCQYPYGQVFSSRHPFCAVPFFEKTFLKKGLAPLFLGLVSTPPPK 986
            F IP  ++G+            K ++ + +   KI   ++ L   S     +L ++ +PV  YL  F W   K+     +++++  I    ++++ D++   A YN+ ++ L A  RK++G L+VR L ++VKPED ++ SEHL T+L  VPK  + D+  SYETL+  VVP S+ ++ E+ EY L+ V LF      F   AREK F                         +++L        +  Y  VF +     A+  + ++ L+ GL P F   +   PPK
Sbjct:   48 FKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPK 335          
BLAST of DY270605 vs. ExPASy Swiss-Prot
Match: VATC_SCHPO (V-type proton ATPase subunit C OS=Schizosaccharomyces pombe GN=SPAPB2B4.05 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.960e-22
Identity = 78/331 (23.56%), Postives = 151/331 (45.62%), Query Frame = 3
Query:   18 SRYWVVSLPVQN-SAASVWNRLQEQI--SKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSG--IESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIIT-SEHLVTLLAVVPKYSQKDWLASYETLTSYVVPTSSKLLYEENEYALYTVTLFGPC*DNFRIPAREKGFQXXXXXXXXXXXXXXXXXXXXIFPHQKNLDNSPFAWCQYPYGQVFSSRHPFCAVPFFEKTFLKKGLAPLFLGLVSTPPPKGE 992
            S +W++S+P +  S A + + ++  +     S  + +  F++P  +V +            K ++   S   KI   I+     S   ++   +  D  P++ Y++ F W+ +++     + EI D I + +   E+D++ R   +    S    + +KQSG+L+ + L+N+V  ED++  S++L  +   VP   +K +L SYETLT  V+P S+K L +++E+ LYTV +F    D+F   ARE  +                         +K + +S   +    + + F        +  + ++ L+ GL P F  ++  P  K E
Sbjct:    4 SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQSEQLTKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLE-YVSSFAWNSSRFHMNKTISEISDRITSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHEEDVVHGSDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPRSAKKLDQDSEFVLYTVVVFKKTADSFITKAREAKYTIREFTFEQGLRETEQSEFDDAAVKEKRMLSSLLRYASIAFSESFQGWIHLKCLCVYVESILRYGLPPDFSSVIFQPMAKSE 333          
The following BLAST results are available for this feature:
BLAST of DY270605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VATC_DROME1.199e-3134.51V-type proton ATPase subunit C OS=Drosophila melan... [more]
VATC_YEAST3.056e-2728.13V-type proton ATPase subunit C OS=Saccharomyces ce... [more]
VATC_SCHPO2.960e-2223.56V-type proton ATPase subunit C OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YC12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270605 ID=DY270605; Name=DY270605; organism=Citrus clementina; type=EST; length=1231bp
GTGATCGTGAAATGTCATCAAGGTACTGGGTGGTGTCTCTTCCAGTACAA
AATTCAGCCGCTTCTGTTTGGAATCGATTACAGGAACAAATCTCTAAACA
TTCATTTGACACTCCTCTTTACAGGTTTAATATCCCCAACCTCCGTGTTG
GAACCCTAGATTCACTCCTTGCACTTAGCGATGATCTCGTGAAGTCAAAT
AGCTTTGTTGAATCAGTATCTCACAAGATCAGGCGACAGATTGAGGAACT
GGAGAGGGTATCAGGCATAGAGAGTAGTTCTTTGAGTGTTGATGGAGTAC
CAGTTGATACTTATCTCACTAGGTTTGTTTGGGATGAAGCAAAGTACCCA
ACTATGTCACCTTTAAGGGAAATTGTGGATGGCATTCATACTCTTGTGGC
AAAGATTGAAGACGATCTTAAGGTTCGTGTTGCTGAGTATAATAATGTCC
GCAGTCAGCTGAATGCTATTAATCGAAAGCAAAGTGGAAGCTTAGCTGTT
CGTGATCTTTCCAATCTGGTAAAACCAGAGGATATCATTACCTCAGAACA
TCTTGTAACCCTTCTTGCTGTTGTCCCCAAGTACTCCCAGAAGGATTGGT
TGGCTAGCTATGAGACGTTGACTAGCTATGTGGTCCCCACGTCCTCCAAG
CTATTGTATGAGGAAAATGAATATGCCCTTTACACTGTCACACTATTTGG
ACCTTGTTGAGACAATTTCAGAATACCTGCCCGTGAAAAGGGCTTCCAAA
ATTCTGATTTTGGAAAAAATTCCTGAAACAACAAAAAGTCCTAATCAGGA
TTTGGAAAAATTTTTCCCCACCAAAAAAACCTGGACAACTCTCCTTTTGC
ATGGTGCCAATACCCTTACGGCCAGGTTTTTAGTTCCCGGCATCCATTTT
GTGCCGTACCTTTTTTTGAAAAAACATTTTTAAAAAAAGGATTGGCCCCC
CTCTTTCTGGGCCTTGTTTCAACCCCCCCCCCAAAAGGGGAAAAAAAATT
TCGGGCTTCTTCCTAAAAAAAATTTCCGGCCAAACCTAAACCCCCCTTTT
TCGAAAATACCAACAATTCCATCCTCAAAAAGACTATCAATCTAGGCAAA
ACAAACATTTTAATCTCTCCTCAAGTATGGAGACATCCACCACAAACTAA
CACTCCATCTAAATCAAACCTGGCCACAAAACGCACCTACGGATGCTACG
AACTCACTACGGTTACAAAAATATTAGATGC
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