DY270619

Overview
NameDY270619
Unique NameDY270619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1221
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270619 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.903e-13
Identity = 34/129 (26.36%), Postives = 77/129 (59.69%), Query Frame = 3
Query:   81 AVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 467
            +++D+   K+ EL      + I+ K  +  K+V+ E      +++ED+    P ++CRY VYD+ ++  +  +K++IFFI+W P   ++++K+++ +++    ++L GI   ++ATD +E+   + ++R
Sbjct:    6 SINDEVITKYNELILGHISKGIIIKFSDDFKEVVFEDSFNG-ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEER 133          
BLAST of DY270619 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 2.485e-13
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   69 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQ 422
            ASG+ V DD    F ++K         AK+  + ++F + + +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+ W+P+ A ++SKMIYASSKD  ++   GI+ E Q
Sbjct:    2 ASGVMVSDDVVKVFNDMKVRHQLSPEEAKKRKKAVIFCLSDDKKTIILEPGKEILQGDVGCNVEDPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136          
BLAST of DY270619 vs. ExPASy Swiss-Prot
Match: COF3_DICDI (Cofilin-3 OS=Dictyostelium discoideum GN=cofD-1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.687e-12
Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 3
Query:   84 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 467
            +  +C+  F ++K +  Y+ I+ K+ E +  ++V+K       + + A SLP ++CR  +Y Y     ++ + S++FFI W PD+A  + K+IY ++K      L GI  ++ A++  E+   VF DR
Sbjct:   11 ISPECQTHFQDIKFRNKYQGILLKVNE-ESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRY-----KSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDR 132          
BLAST of DY270619 vs. ExPASy Swiss-Prot
Match: ADF2_CAEEL (Actin-depolymerizing factor 2, isoform c OS=Caenorhabditis elegans GN=unc-60 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.326e-11
Identity = 42/137 (30.66%), Postives = 72/137 (52.55%), Query Frame = 3
Query:   69 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASL-----PAEECRYAVYDYDFVTAENCQK-----SRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQ--VELQATDPSEM 443
            ASG+ V   CK  +  L  K  + +I+FKI++    ++VEK+GE    Y +F   +       +ECRYA  D +        +     +++ F+ + PD A VR +M+YASS    K  L G++   ++QA++ S++
Sbjct:    2 ASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKLVEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 137          
The following BLAST results are available for this feature:
BLAST of DY270619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
COF4_DICDI1.903e-1326.36Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
COF1B_XENLA2.485e-1334.56Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
COF3_DICDI4.687e-1229.69Cofilin-3 OS=Dictyostelium discoideum GN=cofD-1 PE... [more]
ADF2_CAEEL2.326e-1130.66Actin-depolymerizing factor 2, isoform c OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YD02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270619 ID=DY270619; Name=DY270619; organism=Citrus clementina; type=EST; length=1221bp
CTTCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTA
GAAACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAA
GCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTAT
TTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAG
CCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGTG
CCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAA
AAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGA
AGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGA
TGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTG
ACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAAT
TGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGTGAAATGTTAATAG
TTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATATTGGTTTGTTGTT
CAAGTTTCACCGATGCAGTATTCTCGTCTAGAACCATTTCAGTGGTCTTT
ATGATGTCTTTATTGATTTGTTGTGGTGTGGAAGTTATGGGATGAGTGGC
TACTTATACCTATTTCGTCCAGCTAAGGTGTTTCATTTGATGGGGGAAGG
ATAACCCTTCTGTTAGGGTTTGTTTTTACTTTAAAAAAAAAAAAAAAAAA
AAAAAAACCCCACCTTTCTTGACCAAGTTGGCCCTAAAAAAAAACCATGC
CTAATCCTTTTTGTTCCCCGAAACCGTCCCTATCCGTCCAAAATAAAATC
ATTTATTCTCCCCCCCCGCCCGAAACCCCCCCCTCAGCGGATCCCACAAT
AAATGGGCAAAAAGCTGCTTTCCCCGGCCCCCTCGGCCCCCCGGCTCTCC
AAATTCCCGAATATGTTCCCACTCAACCACAATAAAAAAAAAAATCTCAC
CACCGTCCAAACAAAAAAACCCCTCCCACGCCACCAAAACACACCCATCC
TCCTTTATTCGTTCTAATTCCCCGGCTTTCGCCACTGACCCCCATCTCTT
TCTCAACACCTCCCCTCTCTTTTCTCCTCCTAAAACTACAGGGAGGACAC
ACCAACTCCCCCCCCCCCCGC
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