DY270634

Overview
NameDY270634
Unique NameDY270634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1101
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY270634 vs. ExPASy Swiss-Prot
Match: NIFU_PLEBO (Nitrogen fixation protein nifU (Fragment) OS=Plectonema boryanum GN=nifU PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.498e-11
Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 2 
Query:  272 AVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 526
            A    ++ I  PLT       I+ VLDE +RP LI+DGG+V L+++DG+ V++ L+GACGSC SS  T+K  +E +L  ++   + V++V
Sbjct:  116 AAEISEAQIRKPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSCASSTATLKDAVEAKLRLRVLPTLVVQAV 205
The following BLAST results are available for this feature:
BLAST of DY270634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NIFU_PLEBO4.498e-1141.11Nitrogen fixation protein nifU (Fragment) OS=Plect... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YD22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270634 ID=DY270634; Name=DY270634; organism=Citrus clementina; type=EST; length=1101bp
TCAAATCGAATCCTCTGAAAGGAAAAAAAAAAAAGTATACACCCGAAGAA
ATACAAAGAGAAAGATGCAAGGCGTTGTGTTGAACCCAACTTACAGTCGC
CCTCACCAAACCCTAGACTCTCCTTCTTGTTCTCGTCCTGCCTCTAAGAG
TACTAAAAGTTTCTTTGGAGAACGAGTTTCGCTTACGAGGTGGCGGAATC
CGGTGCGTCACAGCTCGTGTCGGTTACTGCTGATTCGGAAGCGTGGGGCC
GCGCGAAGGAACGTCATAAAGGCTGTGGCTACTCCTGATTCAGCTATTGA
GTTACCTTTAACTGCTGAGAATATTGAAAGTGTATTGGATGAAATTCGAC
CATATCTTATATCAGATGGGGGAAATGTGGCATTACATGAGATTGATGGC
AATGTTGTACGATTGAAGCTACAGGGAGCATGTGGGTCTTGTCCCAGTTC
TGTTATGACGATGAAGATGGGTATTGAGCGTCGCTTAATGGAGAAGATCC
CCGAGATAGTTGCAGTGGAATCGGTAGCAGATGAAGAAACTGGGCTTGAG
CTGAATGAAGAAAATATAGAGAAGGTACTTGAGGAAATCAGGCCCTATCT
TGTTGGGGCAGCAGGTGGATCACTTGAACTTGTGGCAATTGATGAGCCCA
TAGTTAAAGTTCAAATTACGGGTCCCGGGAGCTGGAGTCATGACTGTTCG
TGTGGCTGTTACCCCAAAATTTGCGAAAAAAAATCCCACCCATTGGCACA
GTTTCACTTCCGTAATGTCCAGCAGCCTGGGGTCTGAATAATTCCTGGGG
CTTTTACCCAAAAAGTTGCTTGAAAAAATCCCCACCATTGCCCCCATTCA
ACTTTCGGAATGTCCACATCTTAAACGAAAATACAACCTCTTTACAGCTT
CCCTTTAGAATAATAACACCACAAACTAATTCCTACCCTCCTACTTTTCC
CTGTACTCCCGCTTCCACAACTACCCCACCACATACCCACTCCACCACCC
CCACCCCATCCAAAATTACCACCAACTACGACCATCAACCAACAGCCGCC
ACTTTCTCGCCACACATAAAAACAAACACAAAACAAACCCCCCTCCTTCC
C
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