DY270831

Overview
NameDY270831
Unique NameDY270831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1103
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270831 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.505e-19
Identity = 57/173 (32.95%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  149 VVVAADGSGNFKTVEAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAG-PSKHQ--------AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAARVTNCDI 640
            V+V   G GNF T++ A+ + P   T  + I +KAG+YRE + + +K   I+ +G G+  T +       D ++  +S T A + +  + + ITF N+   PS  +        AVA  +G D SAFY+      QDTL+    R +F  C I G VDFI G+  +   +C I
Sbjct:   29 VIVDQSGHGNFTTIQKAIDSVPINNTHWFFINVKAGLYREKITIPQKKPFIVIVGAGKRSTRVEWD----DHASLAQSPTFATLADNTVVKKITFANSYNFPSNGKINKNPRVPAVAAFIGGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVI 197          
BLAST of DY270831 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.981e-18
Identity = 56/173 (32.37%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  149 VVVAADGSGNFKTVEAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAG-PSKHQ--------AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAARVTNCDI 640
            V V   G GNF T++ A+ + P      + I +KAG+YRE +++  +   I+ +G G+  T +       D  +  +S T + + +  + + ITF N+   PSK +        AVA  +G D SAFY+      QDTL+    R +F  C I G VDFIFG   +   +C I
Sbjct:   34 VFVDQSGHGNFTTIQKAIDSVPINNRHWFFINVKAGLYREKIKIPYEKPFIVLVGAGKRLTRVEWD----DHYSVAQSPTFSTLADNTVVKSITFANSYNFPSKGKMNKNPRTPAVAALIGGDKSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQSCVI 202          
BLAST of DY270831 vs. ExPASy Swiss-Prot
Match: PME1_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.505e-18
Identity = 74/229 (32.31%), Postives = 98/229 (42.79%), Query Frame = 2
Query:  131 SSVTPNVVVAADGSGNFKTVEAAV-AAAPQGGTKRYIIRIKAGVYRE---------------------NVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQN-----TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSN------RQFFVNCLIAGTVDFIFGNAAARVTNCDIPCTKSPIPAKK----FGPSPGQD*PY 706
            S    N  VAADG+  +KTV+AA+ AA   GG  R  I +KAG+Y E                     N ++   + N       +T   +  S N   G  T +SAT  V    F AR++TF+N     T   +   AVAL V  D +   N  ++  QDTL+V +       R +F N  I G  DFIFG   A    C I  T + + AK     F PS     PY
Sbjct:   74 SGFRANYAVAADGTAQYKTVQAAIDAAVNAGGVARRYISVKAGIYNELVCVPESAPPITLYGLDANAGNTQIVYNNANPTPASGAKTNPCMGTSSNATVG--TLRSATAMVRASDFHARNLTFKNSYVEGTYADNNQSAVALAVRGDKAILENVSVIGNQDTLFVGATSTTTVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTIQYTAARLGAKAASYIFAPSTAPGNPY 300          
BLAST of DY270831 vs. ExPASy Swiss-Prot
Match: PME2_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.110e-17
Identity = 74/229 (32.31%), Postives = 97/229 (42.36%), Query Frame = 2
Query:  131 SSVTPNVVVAADGSGNFKTVEAAV-AAAPQGGTKRYIIRIKAGVYRE---------------------NVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQN-----TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSN------RQFFVNCLIAGTVDFIFGNAAARVTNCDIPCTKSPIPAKK----FGPSPGQD*PY 706
            S    N  VAADGS  +KTV+AA+ AA   GG  R  I +KAG Y E                     N  +   + N       +T   +  S N   G  T +SAT  V    F AR++TF+N     T   +   AVAL V  D +   N  ++  QDTLY+ +       R +F N  I G  DFIFG   A    C I  T + + A+     F PS   D P+
Sbjct:   74 SGFRANYAVAADGSAQYKTVQAAIDAAVADGGVARKYISVKAGTYNELVCVPESAPPITLYSLDANANNTVIVYNNANPTPASGAKTNPCMGTSSNATVG--TVRSATAMVRASNFNARNLTFKNSYVEGTFADNNQSAVALAVRGDKAILENVSVIGNQDTLYLGATNNTMVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTIQYTAARLGARATSYVFAPSTAPDNPH 300          
BLAST of DY270831 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.959e-14
Identity = 55/180 (30.56%), Postives = 79/180 (43.89%), Query Frame = 2
Query:  152 VVAADGSGNFKTVEAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTI-------ITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFG-NAAARVTNCDIPCTKSPIPA 667
            +V A   G++ T+ AAV A     T+   I I+ G Y E V +      ++  G     T        IT +  + D     ++AT+    EG    ++   NT G + HQA+A+   A    +Y C    YQDTL   +  Q +    I G VDFIFG +A A    CDI   + P  A
Sbjct:   28 IVVAKSGGDYDTISAAVDALSTTSTETQTIFIEEGSYDEQVYIPALSGKLIVYGQTEDTTTYTSNLVNITHAIALADVDNDDETATLRNYAEGSAIYNLNIANTCGQACHQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLEGPSSA 207          
BLAST of DY270831 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.558e-14
Identity = 57/193 (29.53%), Postives = 85/193 (44.04%), Query Frame = 2
Query:  119 LLQSSSVTPN-VVVAADGSGNFKTVEAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIG-----DGRTRTIITGSRNVV---DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFG-NAAARVTNCDIPCTKSPIPA 667
            L  S +  P+  +V A   G++ T+  A+ A     T    I I+ G Y E V +      ++  G     D     ++T +  +     G +   +AT      G    ++   NT G + HQA+AL   AD   +Y C+   YQDTL   +  Q ++N  I G VDFIFG +A A   N DI   + P  A
Sbjct:   16 LAASRTTAPSGAIVVAKSGGDYTTIGDAIDALSTSTTDTQTIFIEEGTYDEQVYLPAMTGKVIIYGQTENTDSYADNLVTITHAISYEDAGESDDLTATFRNKAVGSQVYNLNIANTCGQACHQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDIRVVEGPTSA 208          
BLAST of DY270831 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.166e-13
Identity = 53/178 (29.78%), Postives = 85/178 (47.75%), Query Frame = 2
Query:  128 SSSVTPNVVVAADGSGNFKTVEAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIIT-GSRNVVDGSTTFKSATVAVVGEGFLARDITFQN------TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAARVTNCDI 640
            SS +   ++V  + +  FKTV++A+ + P        I I  G+Y E V + +    I   G G  +TII  G   + + S TF S    ++  G     ITF+N      ++ P+K    A+ +G D  A  +     +QDTLY    R ++  C+I+G +DFIFG A +    C +
Sbjct:   34 SSQIAKTIIVNPNDARYFKTVQSAIDSIPLQNQDWIRILISNGIYSEKVTIPRGKGYIYMQGGGIEKTIIAYGDHQLTNTSATFTSYPSNIIITG-----ITFKNKYNIASSSSPTKPAVAAMMLG-DKYAIIDSSFDGFQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTL 205          
BLAST of DY270831 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.084e-12
Identity = 50/180 (27.78%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  128 SSSVTPNVVVAADGSGNFKTVEAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAG--PSKHQ----AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAARVTNCDIPCT 649
            +  +   + V  +G GNF TV++A+ +          +  + G+YRE V + K+   I   G G  +T+I       D   T  SAT     +  +   ITF+NT    P+  +    AVA R+  D     +   +  QDTL+    R ++  C+I+G +DFIFG   +    C +  T
Sbjct:   28 AEQIAYTITVDLNGGGNFTTVQSAIDSISPPNHNWIRVFTQNGIYREKVTIPKEKGFIYLQGKGIEQTVIEYD----DHQATDISATFTAFADDIVISGITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMT 203          
The following BLAST results are available for this feature:
BLAST of DY270831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PME55_ARATH4.505e-1932.95Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME29_ARATH4.981e-1832.37Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME1_RALSO6.505e-1832.31Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME2_RALSO1.110e-1732.31Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME_ASPTU1.959e-1430.56Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME_ASPAC2.558e-1429.53Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME10_ARATH2.166e-1329.78Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME66_ARATH4.084e-1227.78Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YO04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270831 ID=DY270831; Name=DY270831; organism=Citrus clementina; type=EST; length=1103bp
CAAGAACATGACCCTTACTGACATGATGATCATGAGGACTTCAAACAACA
GGAAGCTGACAGAGGAGACCAGTACGGGTGATGGGTGGCCGGCTTGGCTG
TCCCCCGGCGACAGGAGGCTGTTGCAGTCGTCGTCGGTGACACCGAACGT
GGTGGTGGCGGCAGATGGCAGCGGAAACTTTAAGACGGTTGAGGCAGCGG
TGGCGGCGGCTCCTCAGGGAGGCACTAAGCGGTATATTATTAGGATTAAA
GCTGGTGTTTATCGGGAAAATGTTGAGGTGACAAAGAAGCATAAAAATAT
AATGTTCATCGGTGACGGAAGGACTAGAACTATCATCACAGGAAGTAGAA
ATGTGGTTGATGGAAGCACAACTTTCAAGTCTGCTACAGTTGCTGTTGTT
GGTGAAGGATTCTTGGCCCGAGACATTACATTCCAAAACACAGCAGGCCC
CTCAAAGCACCAGGCAGTGGCACTGCGAGTGGGAGCTGACCTTTCAGCAT
TTTACAATTGCGATATGTTAGCTTACCAAGACACACTCTACGTCCACTCG
AACCGCCAGTTCTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTCAT
TTTTGGTAATGCTGCAGCCCGTGTTACAAATTGTGACATCCCATGCACGA
AAAGCCCAATTCCGGCCAAAAAATTTGGTCCCAGCCCAGGGCAGGACTGA
CCCTACCCAAAACCCCCGGCTTTGCCTTCAAAAACCCAGGAATGGTGCCC
CCTCCCATTTAATACCGGTTTCAAGGTAATTTCCCCAACCCTCCCCCGCC
GGCCCCGGTAGGATTCTCTCCAGGACGGTTGACATGCCGTCCCCCATTTC
CGACTGGTCCCCCCCCTGCCCGGGGGACCAGTTGGGATCGTACCCTCCCC
CTTTACCCCCTCTTTCTAGTTACACAAATAAAACCCAGAAATGTGTTCCT
GAAAATCTCATATAAAAAACAACTGATCATGATTTCTCTGGCATTTTTTA
TTTCCCCCTCTCCTCCCCCCTCCCTCTCCCCTCACAACGTCTCATTCCCC
TCGCTAGCCACTCTCCGTCTGGTACCCCCCTCCTCACATCTTCCCCTTCC
CTA
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