DY270839

Overview
NameDY270839
Unique NameDY270839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270839 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.793e-22
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  145 SYDPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 450
            ++DPFAD IK +      G VH+R+QQRNG+K LTTVQGL  ++  +KI++  KKEF CNG V+     G+V+QLQGD R+N+  +L KS +   +++K+HGF
Sbjct:    8 TFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of DY270839 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.814e-22
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  151 DPFAD-IKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 450
            DPFAD IK +      G VH+R+QQRNG+K LTTVQGL  ++  +KI++  KKEF CNG V+     G+V+QLQGD R+N+  +L K  +   D++K+HGF
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
BLAST of DY270839 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.203e-18
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  214 VQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 450
            +QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of DY270839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_ANOGA1.793e-2248.54Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME6.814e-2249.50Protein translation factor SUI1 homolog OS=Drosoph... [more]
EIF1_CHICK1.203e-1851.90Eukaryotic translation initiation factor 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YO14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270839 ID=DY270839; Name=DY270839; organism=Citrus clementina; type=EST; length=638bp
CAAACAATTAGCTCTCGAAGTCTCTTTACTTCTCACACTTTCATTTCAGT
ACTTTTGCACAGGAAACTTCTAAGCTGACCTTCGAAGGTTTTAGGTCTTC
TATAAGCAAAGTACATGGTTGACATAGACAGCCAGATTCCAACTTCCTAT
GATCCCTTTGCTGATATAAAGGACTCCCTTGCCCCAGGTGACAAAGGGTA
CGTGCATCTCCGCGTACAGCAGAGGAATGGAAAGAAGTGCTTAACAACTG
TTCAAGGACTTAAAGAGGATTTTGGCTACCAGAAGATCCTCAAGGACCTC
AAAAAGGAGTTCTGTTGTAACGGGAATGTTGTCAATGACAAAGTTCTCGG
GAAGGTGATTCAGCTTCAAGGTGATCATCGGAAGAATGTTATGATCTTTC
TCGTTAAGAGTAAGATTGTGGACAAGGATCGTATCAAGATTCATGGTTTC
TAAGCAAATGTGGTGATTAATATATATGGTTATGGTATAATATATGTGGT
CTTATGTGATCTGCAGAGCATATCTGTAGTCTGTTCTTGTTGAGGTTTTC
TGTATTTCTCTGGAACTGGATTTAAAGATTTTCTGTTCTCAAGTTTATGG
ATAATGATAACTAAAAGTTATGGATATTTTTTATACGG
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