DY270854

Overview
NameDY270854
Unique NameDY270854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG2_YEAST (Glycyl-tRNA synthetase 2 OS=Saccharomyces cerevisiae GN=GRS2 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 4.433e-54
Identity = 123/296 (41.55%), Postives = 178/296 (60.14%), Query Frame = 1
Query:  214 RQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEK-LEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVN-STCQNEPFGDPQNNPTQNFKN-LQIWIS*SSQGEEKMSREILPKRISPKGKAVFQGKKKNKENLLGFF 1092
            R  + +TL RR F+ PSF+IY GV+GL+D GPPGC +++N++  WR+HF++EE+ML+VD P +TP  VLK SGHV+KFTD M ++ K G  YRADHL++    ++ L+KD++   +    +  +L  +D  S  EL   ++EY I  P T + L     FNLMF+T IG SG +  ++RPETAQG F+NF  L   N  K+PFA+A IG++FRNE S    L +       + E F DP N     F   L   I   S+  ++     LP +++  G+AV  G  +N+   LG+F
Sbjct:    9 RDKLESTLRRRFFYTPSFEIYGGVSGLFDLGPPGCQLQNNLIRLWREHFIMEENMLQVDGPMLTPYDVLKTSGHVDKFTDWMCRNPKTGEYYRADHLIEQTLKKRLLDKDVN--PQDMKNMEKILTTIDGFSGPELNLVMQEYNINDPVTNDVLDALTSFNLMFETKIGASGQLKAFLRPETAQGQFLNFNKLLEINQGKIPFASASIGKSFRNEISPRSGLLRVREFLMAEIEHFVDPLNKSHAKFNEVLNEEIPLLSRRLQESGEVQLPVKMT-IGEAVNSGMVENE--TLGYF 299          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_ENCCU (Glycyl-tRNA synthetase OS=Encephalitozoon cuniculi GN=ECU10_1790 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 6.200e-48
Identity = 106/220 (48.18%), Postives = 140/220 (63.64%), Query Frame = 1
Query:  202 REAFRQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            R+  +Q +   L++R F   S  IY GV+GLYD GPPG ++K+N+L+ WR+HFVLEEDMLE++   + P  VLKASGHV+KF D++V DE  G C+RADHL+ D     LEK          E+   L  +D +S +E+   I +Y I +    N LS    FNLMF T IG  G    ++RPETAQG F+NFK L  YN +KLPFA+A IG+A+RNE S
Sbjct:    2 RKFDQQQIEQILKKRFFITQSAYIYGGVSGLYDLGPPGLSIKTNILSLWRKHFVLEEDMLEIETTTMLPHDVLKASGHVDKFCDILVFDEVSGDCFRADHLVGD----ALEK-----MSPTEEISKELQKVDCMSCQEIDEIISKYNIRS-TLGNKLSKSQQFNLMFGTQIGYKGGQTMFLRPETAQGQFLNFKKLCEYNNDKLPFASASIGKAYRNEIS 211          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_METTP (Glycyl-tRNA synthetase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=glyS PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.913e-45
Identity = 100/249 (40.16%), Postives = 140/249 (56.22%), Query Frame = 1
Query:  217 QTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVN-STCQNEPFGDPQNNPTQNFKNLQ 960
            + V     RR F  PSF++Y G AG YDYGP G  +K  +   WR+ FV+ E   E++CP +  E V +ASGH+  F+D + + ++    YRADHL+K                      H++ V D LSAEE+   IKE  IT P+    LS+ Y FNLMF+T+IGP    PGY+RPETAQG+F+NF+ L  Y  + LPF A QIG+++RNE S  + + +    S  + E F DP+N     F  ++
Sbjct:    5 EQVTELARRRGFMWPSFELYGGAAGFYDYGPLGARLKRRIEDIWRRFFVIGEGFAEIECPTIGIEEVFRASGHLSGFSDPLTECKECKEIYRADHLIK----------------------HIVEVPDALSAEEIYRMIKENDITCPECGGELSEVYEFNLMFRTAIGPGNRHPGYLRPETAQGMFINFQRLLRYYRDSLPFGAVQIGRSYRNEISPRQGVIRLREFSQAEAEVFIDPRNKQHPRFSEVK 231          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_METM6 (Glycyl-tRNA synthetase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=glyS PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.643e-40
Identity = 90/213 (42.25%), Postives = 124/213 (58.22%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            + +  +RR F   SF+IY G+AG +DYGP G  +K+NV+  WR+H+++ E   E+D P VTP  VLKASGHVE FTD +V+ +     +RADH+++    E ++ D                  +  + +EL   I++  I  P       D   FNLMF TSIGP G    +MRPETAQGIF+ FK +  +  NKLPF A QIG+A+RNE S
Sbjct:    7 IIDLTKRRGFLWNSFEIYGGIAGFFDYGPLGAILKNNVINTWRKHYIVNEGFYEIDSPTVTPYEVLKASGHVENFTDPLVECKGCLESFRADHIIE----ENVDVD-----------------TEGKTLQELQEMIEKNNIKCPKCGGEFKDVSTFNLMFATSIGPGGKRAAFMRPETAQGIFIQFKRISQFFRNKLPFGAVQIGKAYRNEIS 198          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_METM7 (Glycyl-tRNA synthetase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=glyS PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 4.758e-40
Identity = 89/213 (41.78%), Postives = 125/213 (58.69%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            + +  +RR F   SF+IY G+AG +DYGP G  +K+NV+  WR+H+++ E   E+D P VTP  VLKASGHVE FTD +V+ ++    +RADH+++    E ++ D                  +  + +EL   I++  I  P       +   FNLMF TSIGP G    +MRPETAQGIF+ FK +  +  NKLPF A QIG+A+RNE S
Sbjct:    7 IIDLTKRRGFLWNSFEIYGGIAGFFDYGPLGAILKNNVINTWRKHYIVNEGFYEIDSPTVTPYEVLKASGHVENFTDPLVECKECLESFRADHIIE----ENVDVD-----------------TEGKTLQELQEMIEKNNIKCPKCGGEFKEVSTFNLMFATSIGPGGKRAAFMRPETAQGIFIQFKRISQFFRNKLPFGAVQIGKAYRNEIS 198          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_METM5 (Glycyl-tRNA synthetase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=glyS PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 6.214e-40
Identity = 89/213 (41.78%), Postives = 124/213 (58.22%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            + +  +RR F   SF+IY G+AG +DYGP G  +K+NV+  WR+H+++ E   E+D P VTP  VLKASGHVE FTD +V+ +     +RADH+++    E ++ D                  +  + +EL   I++  I  P       +   FNLMF TSIGP G    +MRPETAQGIF+ FK +  +  NKLPF A QIG+A+RNE S
Sbjct:    7 IIDLTKRRGFLWNSFEIYGGIAGFFDYGPLGAILKNNVINTWRKHYIVNEGFYEIDSPTVTPYEVLKASGHVENFTDPLVECKSCLESFRADHIIE----ENVDVD-----------------TEGKTLQELQEMIEKNNIKCPKCGGEFKEVSTFNLMFATSIGPGGKRAAFMRPETAQGIFIQFKRISQFFRNKLPFGAVQIGKAYRNEIS 198          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_METJA (Glycyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=glyS PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 6.214e-40
Identity = 86/215 (40.00%), Postives = 127/215 (59.07%), Query Frame = 1
Query:  217 QTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            + + +  +RR +   SF+IY G+AG  DYGP GC +K+N+++ +R+ ++++E   E++ P VTP  VLKASGHV+ FTD +V+ +     +RADHL+++F +   E                       + +EL   I+++ I  P     L +   FNLMF TSIGP G   GYMRPETAQGIF+ F+ L  +  NKLPF   QIG+++RNE S
Sbjct:    7 EKIMDLAKRRGYLWSSFEIYGGIAGFVDYGPLGCLLKNNIISKFREQYIIKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVECKNCLESFRADHLIEEFVDVDTE---------------------GKTLKELDELIRKHNIRCPKCGGELGEVKKFNLMFVTSIGPGGKRTGYMRPETAQGIFIQFRRLAQFFRNKLPFGVVQIGKSYRNEIS 200          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_METMP (Glycyl-tRNA synthetase OS=Methanococcus maripaludis GN=glyS PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 8.116e-40
Identity = 89/213 (41.78%), Postives = 124/213 (58.22%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            + +  +RR F   SF+IY G+AG +DYGP G  +K+NV+  WR+H+++ E   E+D P VTP  VLKASGHVE FTD +V+ +     +RADH+++    E ++ D                  +  + +EL   I++  I  P       +   FNLMF TSIGP G    +MRPETAQGIF+ FK +  +  NKLPF A QIG+A+RNE S
Sbjct:    7 IIDLTKRRGFLWNSFEIYGGIAGFFDYGPLGAILKNNVINTWRKHYIVNEGFYEIDSPTVTPYEVLKASGHVENFTDPLVECKDCLESFRADHIIE----ENVDVD-----------------TEGKTLQELQEMIEKNNIRCPKCGGEFKEVSTFNLMFATSIGPGGKRAAFMRPETAQGIFIQFKRISQFFRNKLPFGAVQIGKAYRNEIS 198          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_METVS (Glycyl-tRNA synthetase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=glyS PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.028e-39
Identity = 88/213 (41.31%), Postives = 122/213 (57.28%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            + +  +RR F   SF+IY G+AG +DYGP G  +KS+V+  WR+H+++ E   E+D P V P  VLKASGHVE FTD +V+ +     +RADH+++    E +E D                  +  +  EL   I++  I  P       +   FNLMF TSIGP G    +MRPETAQGIF+ FK +  +  NKLP+ A QIG+A+RNE S
Sbjct:    7 IIDLTKRRGFLWNSFEIYGGIAGFFDYGPLGAILKSSVINTWRKHYIINEGFYEIDSPTVNPYEVLKASGHVENFTDPLVECKSCLESFRADHIIE----ENIEVD-----------------TEGKTLNELQEMIEKNNIKCPKCGGEFKEVNTFNLMFATSIGPGGKRAAFMRPETAQGIFIQFKRISQFFRNKLPYGAVQIGKAYRNEIS 198          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_THEGJ (Glycyl-tRNA synthetase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=glyS PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 8.973e-39
Identity = 101/243 (41.56%), Postives = 134/243 (55.14%), Query Frame = 1
Query:  235 LERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVNST-CQNEPFGDPQNNPTQNFKNLQ 960
            + RR F   SF+IY G  G YDYGP G  +K  +    R+ F   E   E++ P +TPE V  ASGHVEKF D +V+  K G  +RADH+++    E L  D+                 + LSAEEL   I+E+ I  P+    LSD + FNLMF+T IGP G   GY+RPETAQGIFVNFK L  +  NKLPF   QIG+A+RNE S  + + +    T  + E F +P      +F  ++
Sbjct:   15 MRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIEQKIREAFQ-REGFFELETPDITPEKVFIASGHVEKFVDPLVECRKCGARFRADHIIE----EALGMDV-----------------EGLSAEELTKLIREHDIRCPECGGELSDVWYFNLMFETKIGPYGDQKGYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAEAEIFFNPSETEHPHFDEVK 235          
The following BLAST results are available for this feature:
BLAST of DY270854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
SYG2_YEAST4.433e-5441.55Glycyl-tRNA synthetase 2 OS=Saccharomyces cerevisi... [more]
SYG_ENCCU6.200e-4848.18Glycyl-tRNA synthetase OS=Encephalitozoon cuniculi... [more]
SYG_METTP4.913e-4540.16Glycyl-tRNA synthetase OS=Methanosaeta thermophila... [more]
SYG_METM63.643e-4042.25Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METM74.758e-4041.78Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METM56.214e-4041.78Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METJA6.214e-4040.00Glycyl-tRNA synthetase OS=Methanocaldococcus janna... [more]
SYG_METMP8.116e-4041.78Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METVS4.028e-3941.31Glycyl-tRNA synthetase OS=Methanococcus vannielii ... [more]
SYG_THEGJ8.973e-3941.56Glycyl-tRNA synthetase OS=Thermococcus gammatolera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YP08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270854 ID=DY270854; Name=DY270854; organism=Citrus clementina; type=EST; length=1130bp
CTTCGGCGAACCCTAGCCGAGAAGCAATCGGCTGTCGACGCTCAAGGCAA
TGCCGTCAGAGCTCTCAAAGCCGCAAAAGCTTCCAAGTCCGAAATCGACG
CTGCTATTGAATCACTCAATCGATTGAAACTCGAGAAGTCATCGGTCGAA
AGGGAGCTCCAGAGTGTCGTTAGTGGTAGCGGCGGGGGTGCTTCTGTTAA
CAGGGAGGCTTTCCGTCAGACTGTCTTTAACACTCTTGAACGGCGTTTGT
TTTTTATTCCATCTTTCAAGATTTACCGTGGTGTTGCTGGTCTTTATGAT
TACGGGCCACCTGGCTGTGCCGTTAAGTCTAACGTTCTTGCTTTTTGGCG
TCAGCACTTTGTTCTGGAAGAGGATATGTTAGAGGTGGACTGCCCATGTG
TGACTCCTGAGGCTGTGTTGAAAGCGTCTGGTCATGTTGAAAAATTTACT
GACCTTATGGTTAAGGATGAGAAAATGGGGACCTGTTATCGTGCTGACCA
CTTGCTTAAGGATTTCTGTAATGAGAAGCTTGAGAAAGACCTTAGCTTAT
ATGCAGAGAAGGCTGCGGAATTGAGACATCTACTGGCAGTCTTGGATGAT
TTATCAGCCGAGGAGCTTGGTGCTAAGATCAAGGAGTATGGTATTACTGC
TCCTGACACAAAGAATCCGCTGTCTGATCCCTATCCATTCAACTTAATGT
TTCAAACATCAATTGGCCCCTCCGGGCTGATCCCTGGGTATATGCGCCCT
GAAACAGCACAAGGCATATTTGTGAATTTTAAAGATTTGTATTATTACAA
TGGAAACAAACTCCCTTTTGCTGCTGCCCAAATTGGGCAGGCTTTTAGGA
ATGAAAAATCCCTCCCCAAGGCCCTTTGAAAGTTCGTGAATTCCACTTGC
CAAAATGAACCCTTTGGTGACCCTCAGAACAATCCCACCCAAAATTTCAA
AAATTTGCAAATTTGGATTTCCTGAAGTTCCCAAGGGGAGGAAAAAATGT
CTCGGGAAATTCTGCCAAAAAGGATATCCCCTAAGGGGAAAGCTGTTTTT
CAAGGGAAAAAAAAAAACAAGGAAAATCTCTTGGGTTTTTTTTTTGGGGA
AAAAAAAATTTTTCCTTTTTCAAACAGGGG
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