DY270854

Overview
NameDY270854
Unique NameDY270854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_LEIXX (Glycyl-tRNA synthetase OS=Leifsonia xyli subsp. xyli GN=glyQS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.880e-20
Identity = 76/218 (34.86%), Postives = 106/218 (48.62%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEE-DMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAV-LDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIG----PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            +V    + R F  PS  IY G    +DYGP G  +K N+   W   FV    DM+ +D   + P AV +ASGHV+ F+D + +       YRADHL + +                AE  H  A  LDD++  +   K+ ++         P+    PF+ + +T +G     SGL   YMRPETAQGIF +F  +   +  K PF   QIG+AFRNE
Sbjct:   10 SVITLAQHRGFVFPSGDIYGGTRSAWDYGPLGVELKENIKREWWNSFVRGRGDMVGLDSAIILPTAVWEASGHVKVFSDPLTESLITHKRYRADHLFEAY---------------EAEHGHPPANGLDDIADPDHPEKVGQW--------TPIR---PFSGLMKTYLGIVDDESGL--HYMRPETAQGIFTDFASVLQTSRKKPPFGIGQIGKAFRNE 199          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MESFL (Glycyl-tRNA synthetase OS=Mesoplasma florum GN=glyQS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.455e-20
Identity = 71/213 (33.33%), Postives = 108/213 (50.70%), Query Frame = 1
Query:  235 LERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKN-PLSDPYPFNLMFQTSIG----PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            L+ + F     +IY G+A  +DYGP G  VK+ +   W  HFV +    + +D   +   +V KASGH++ F D ++  +K  + +RAD L+++F N ++                   V+ +   EE    I+E  I  P  +    +    F LMF+T+ G     S  +  Y+RPETAQGIF+NFK+       KLPF   QIG++FRNE
Sbjct:    8 LKSQGFIFQGSEIYGGLANSWDYGPLGVEVKNKLKQAWWNHFVRKNPYNIGLDSSIILNSSVWKASGHIDGFNDPLIDCKKCNSRWRADKLIEEF-NSEINA----------------GVMTENQMEEF---IREQNIKCPKCQACDFTQIRKFALMFKTNQGVLEDESSSV--YLRPETAQGIFINFKNAQRSLRKKLPFGIGQIGKSFRNE 198          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STRCO (Glycyl-tRNA synthetase OS=Streptomyces coelicolor GN=glyQS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.143e-20
Identity = 71/216 (32.87%), Postives = 101/216 (46.76%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLE-EDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGP---SGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  +RR F  P  +IY G    +DYGP G  +K N+   W ++ V   ED++ +D   +    V  ASGHV  FTD + +       +RADHL      E  E+      E           L DL+    G             K   ++P  F+ +  T +GP   SG +  Y+RPETAQGIF NF  +   +  K PF  AQ+G++FRNE
Sbjct:    8 TIVSLSKRRGFVFPCSEIYGGQRAAWDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILAPEVWVASGHVATFTDPLTECTSCHKRFRADHL-----EEAYEEKKGHAPENG---------LADLNCPNCG------------NKGTFTEPKQFSGLLSTHLGPTQDSGSV-AYLRPETAQGIFTNFAQVQTTSRRKPPFGIAQMGKSFRNE 196          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MYCMS (Glycyl-tRNA synthetase OS=Mycoplasma mycoides subsp. mycoides SC GN=glyQS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 9.329e-20
Identity = 67/218 (30.73%), Postives = 112/218 (51.38%), Query Frame = 1
Query:  217 QTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIG----PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            + + + L+ + F     +IY G+A  +DYGP GC VK+ +   W   FV +  + + +D   +    V KASGH++ F D ++  +   + +RAD L+++F     +  ++     +A+L       D ++   +  K  +        K   +    F LMF+T+ G     S ++  Y+RPETAQGIF+NFK++      KLPF   QIG++FRNE
Sbjct:    6 EKMISHLKNQGFVFQGSEIYGGLANSWDYGPLGCEVKNKLKKVWWDFFVKKNPLNVGLDSSIILNSKVWKASGHIDGFNDPLIDCKNCKSRWRADKLIEEF-----DSSINTGIMTSAQLE------DYINQNNILCKKCQ--------KKDFTQIRQFALMFKTNQGVLEDDSSIV--YLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNE 202          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MYCGE (Glycyl-tRNA synthetase OS=Mycoplasma genitalium GN=glyQS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.686e-18
Identity = 86/319 (26.96%), Postives = 140/319 (43.89%), Query Frame = 1
Query:  205 EAFRQTVF-NTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEE-DMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIG----PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVNSTCQNEPFG----DPQNNPTQNFKNLQIWIS*SSQGEEKMSREILPKRISPKGKAVFQGKKKNKENLLGFFFGEKKIFPFSNR 1128
            + + Q V+   L++  F   S +IY G+   +D+GP G  +K  +       F+  + D+L V+ P +  E V KASGH+  F D +V  +     +R D +  +    K +KD +                              + +  P+  N   S+   FNL+FQT IG       L+  ++RPETAQG F+NFK++       LPFA AQ G++FRNE +       F+  T + E F        ++    F+   I +    Q   K++ E+L K    + +      KK  + L  F  G K+++  +NR
Sbjct:    3 KVYNQEVYVQFLKQHGFVFQSSEIYNGLNNSWDFGPLGAVLKQQIKQALYNFFIKNKADVLLVETPIILSELVWKASGHLANFVDTLVDCKSCKYRFRVDQINAEI---KAKKDWN-----------------------------SFKVNCPNCHNQNWSEVRDFNLLFQTEIGVVNNDKRLV--FLRPETAQGSFINFKNILQAKKRNLPFAIAQFGKSFRNEITPG----NFLFRTREFEQFEIEWFCKPDDANSLFEKQLIMVEQFLQTVLKINPELLKKHEYDQSELAHYA-KKTTDFLFNFPHGLKELWGLANR 282          
The following BLAST results are available for this feature:
BLAST of DY270854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
SYG_LEIXX1.880e-2034.86Glycyl-tRNA synthetase OS=Leifsonia xyli subsp. xy... [more]
SYG_MESFL2.455e-2033.33Glycyl-tRNA synthetase OS=Mesoplasma florum GN=gly... [more]
SYG_STRCO7.143e-2032.87Glycyl-tRNA synthetase OS=Streptomyces coelicolor ... [more]
SYG_MYCMS9.329e-2030.73Glycyl-tRNA synthetase OS=Mycoplasma mycoides subs... [more]
SYG_MYCGE6.686e-1826.96Glycyl-tRNA synthetase OS=Mycoplasma genitalium GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YP08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270854 ID=DY270854; Name=DY270854; organism=Citrus clementina; type=EST; length=1130bp
CTTCGGCGAACCCTAGCCGAGAAGCAATCGGCTGTCGACGCTCAAGGCAA
TGCCGTCAGAGCTCTCAAAGCCGCAAAAGCTTCCAAGTCCGAAATCGACG
CTGCTATTGAATCACTCAATCGATTGAAACTCGAGAAGTCATCGGTCGAA
AGGGAGCTCCAGAGTGTCGTTAGTGGTAGCGGCGGGGGTGCTTCTGTTAA
CAGGGAGGCTTTCCGTCAGACTGTCTTTAACACTCTTGAACGGCGTTTGT
TTTTTATTCCATCTTTCAAGATTTACCGTGGTGTTGCTGGTCTTTATGAT
TACGGGCCACCTGGCTGTGCCGTTAAGTCTAACGTTCTTGCTTTTTGGCG
TCAGCACTTTGTTCTGGAAGAGGATATGTTAGAGGTGGACTGCCCATGTG
TGACTCCTGAGGCTGTGTTGAAAGCGTCTGGTCATGTTGAAAAATTTACT
GACCTTATGGTTAAGGATGAGAAAATGGGGACCTGTTATCGTGCTGACCA
CTTGCTTAAGGATTTCTGTAATGAGAAGCTTGAGAAAGACCTTAGCTTAT
ATGCAGAGAAGGCTGCGGAATTGAGACATCTACTGGCAGTCTTGGATGAT
TTATCAGCCGAGGAGCTTGGTGCTAAGATCAAGGAGTATGGTATTACTGC
TCCTGACACAAAGAATCCGCTGTCTGATCCCTATCCATTCAACTTAATGT
TTCAAACATCAATTGGCCCCTCCGGGCTGATCCCTGGGTATATGCGCCCT
GAAACAGCACAAGGCATATTTGTGAATTTTAAAGATTTGTATTATTACAA
TGGAAACAAACTCCCTTTTGCTGCTGCCCAAATTGGGCAGGCTTTTAGGA
ATGAAAAATCCCTCCCCAAGGCCCTTTGAAAGTTCGTGAATTCCACTTGC
CAAAATGAACCCTTTGGTGACCCTCAGAACAATCCCACCCAAAATTTCAA
AAATTTGCAAATTTGGATTTCCTGAAGTTCCCAAGGGGAGGAAAAAATGT
CTCGGGAAATTCTGCCAAAAAGGATATCCCCTAAGGGGAAAGCTGTTTTT
CAAGGGAAAAAAAAAAACAAGGAAAATCTCTTGGGTTTTTTTTTTGGGGA
AAAAAAAATTTTTCCTTTTTCAAACAGGGG
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