DY270854

Overview
NameDY270854
Unique NameDY270854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_PYRHO (Glycyl-tRNA synthetase OS=Pyrococcus horikoshii GN=glyS PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.531e-38
Identity = 97/243 (39.92%), Postives = 133/243 (54.73%), Query Frame = 1
Query:  235 LERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVNST-CQNEPFGDPQNNPTQNFKNLQ 960
            + RR F   SF+IY G  G YDYGP G  +K  +    R+ F+  E   E++ P +TPE V  ASGHVEKF D +V+ +K G  +RADHL+++F    +E                       SAEE+   I+E+G+  P+    LSD + FNLMF+T IGP      Y+RPETAQGIFVNFK L  +  NKLPF   QIG+A+RNE S  + + +    T  + E F +P      +F  ++
Sbjct:   15 MRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIERKIREAFI-REGFFEIETPDITPEQVFIASGHVEKFVDPVVECKKCGMRFRADHLIEEFLGIDVEGK---------------------SAEEMSRIIREHGLKCPECGGELSDVFYFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMIRLREFTQAEAEIFFNPNETEHPHFNEVK 235          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_METKA (Glycyl-tRNA synthetase OS=Methanopyrus kandleri GN=glyS PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.611e-38
Identity = 92/246 (37.40%), Postives = 132/246 (53.66%), Query Frame = 1
Query:  217 QTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVNST-CQNEPFGDPQNNPTQNFK 951
            + +     RR F +P+F+IY G  G YDYGP G  +K  +   WR+++V +E  +E++ P +    V +ASGHVE F D M    + G  +RADHL         E++L + AE              +S EEL   I+E+ +  P+    L++   FNLMF T+IGP     GY+RPETAQ IF+ FKDLY +   KLPF   QIG+A+RNE S  + + +    T  + E F DP+      F+
Sbjct:    7 ERIMEIARRRGFILPAFRIYGGARGFYDYGPLGALLKRKIEEKWREYYVHKEGFMEIEAPNLLIGEVFEASGHVEHFIDPMTHCSECGEFFRADHLA--------EEELGVDAE-------------GMSPEELEDLIREHDLRCPECGGELAEVTEFNLMFDTNIGPKEGRTGYLRPETAQAIFIQFKDLYRWARQKLPFGVVQIGRAYRNEISPRQGVIRLREFTQAEAEVFFDPEEKEYPGFE 231          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_PYRKO (Glycyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=glyS PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.210e-37
Identity = 99/243 (40.74%), Postives = 133/243 (54.73%), Query Frame = 1
Query:  235 LERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVNST-CQNEPFGDPQNNPTQNFKNLQ 960
            + RR F   SF+IY G  G YDYGP G  +K  +    R+ F   E   E++ P +TPE V  ASGHVEKF D +V+ +K G  +RADHL+        E+ L +  E              +SAE L   I+E+ I  P+    LSD + FNLMF+T IGP G   GY+RPETAQGIFVNF+ L  +  NKLPF   QIG+A+RNE S  + + +    T  + E F +P      +F  ++
Sbjct:   15 MRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIERKIREAFQ-REGFFELETPDITPEKVFIASGHVEKFVDPLVECKKCGARFRADHLV--------EEALGIDTE-------------GMSAEHLTQLIREHDIRCPECGGELSDVWYFNLMFETRIGPYGDQKGYLRPETAQGIFVNFRRLNAFARNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAEAEIFFNPNETEHPHFDEVK 235          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_METTH (Glycyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum GN=glyS PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.210e-37
Identity = 88/241 (36.51%), Postives = 131/241 (54.36%), Query Frame = 1
Query:  241 RRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVNST-CQNEPFGDPQNNPTQNFKNLQ 960
            +R F   SF+IY GVAG  DYGP G  +K+ ++  WR+ +V+ E   E++ P + PE  LKASGHV+ F D M + ++    YRADH+++D     +E                      L  +EL   I + GI  P     L+  + +NLMFQT IG  G   GY+RPETAQGIF+ FK L  +  N+LPF   Q+G+++RNE S  + + +    T  + E F DP++    +F+ ++
Sbjct:   15 KRGFLWSSFEIYSGVAGFVDYGPLGATLKNKIMNRWREFYVVREGFYEIESPTIMPEEALKASGHVDHFNDPMTQCKECMDVYRADHIIEDATGRDVE---------------------GLENQELTEIISDEGIRCPRCGGHLTHVWSYNLMFQTLIGARGKKTGYLRPETAQGIFIPFKRLLRFFRNRLPFGVVQLGKSYRNEISPRQGVIRLREFTQAEAEIFVDPEHKTHPDFEEVK 234          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_THESM (Glycyl-tRNA synthetase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=glyS PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.770e-37
Identity = 94/243 (38.68%), Postives = 133/243 (54.73%), Query Frame = 1
Query:  235 LERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVN-STCQNEPFGDPQNNPTQNFKNLQ 960
            + RR F   SF+IY G  G YDYGP G  +K  +    R+ F+  E   E++ P +TPE V  ASGHV+KF D + + +K G+ +RADH++++      E                      LSAE L   I+E+ I  P+    L+D + FNLMF+T IGP     GY+RPETAQGIFVNFK L  +  N+LPF   QIG+A+RNE S  + + +    S  + E F DP+     +F+ ++
Sbjct:   15 MRRRGFVWSSFEIYGGARGFYDYGPLGAIIKRKIEKKIREAFI-REGFFEIETPDITPEEVFIASGHVDKFVDPLTECKKCGSRFRADHIVEEVLGIDTE---------------------GLSAEHLTQLIREHDIKCPECGGELADVWYFNLMFETYIGPYKDKKGYLRPETAQGIFVNFKRLNNFARNQLPFGVFQIGKAYRNEISPRQGMLRLREFSQAEVEIFFDPKQKEHPHFEEVK 235          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_PYRFU (Glycyl-tRNA synthetase OS=Pyrococcus furiosus GN=glyS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.924e-37
Identity = 91/209 (43.54%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  235 LERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            + RR F   SF+IY G  G YDYGP G  +K  +    R+ F+  E   E++ P +TPE V  ASGHVEKF D +V+ +K G  +RADHL+++     +E                       SAEE+   I+E+ I  P+    LSD + FNLMF+T IGP      Y+RPETAQGIFVNFK L  +  NKLPF   QIG+A+RNE S
Sbjct:   13 MRRRGFAWGSFEIYGGARGFYDYGPLGATIKRKIEKKIREAFI-REGFFEIETPDITPEQVFIASGHVEKFVDPLVECKKCGARFRADHLIEETLGIDVEGK---------------------SAEEMTKIIREHNIRCPECGGELSDVWYFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEIS 199          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_PYRAB (Glycyl-tRNA synthetase OS=Pyrococcus abyssi GN=glyS PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.444e-36
Identity = 90/209 (43.06%), Postives = 117/209 (55.98%), Query Frame = 1
Query:  235 LERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            + RR F   SF+IY G  G YDYGP G  +K  +    R+ F+  E   E++ P +TPE V  ASGHVEKF D +V+ +K G  +RADHL+++     +E                       SAEE+   I+E+ I  P+    L D + FNLMF+T IGP      Y+RPETAQGIFVNFK L  +  NKLPF   QIG+A+RNE S
Sbjct:   15 MRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIEKKIREAFI-REGFFEIETPDITPEQVFIASGHVEKFVDPIVECKKCGARFRADHLIEETLGIDVEGK---------------------SAEEMTKIIREHNIKCPECGGELGDVFYFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEIS 201          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_AERPE (Glycyl-tRNA synthetase OS=Aeropyrum pernix GN=glyS PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 7.110e-36
Identity = 94/234 (40.17%), Postives = 133/234 (56.84%), Query Frame = 1
Query:  238 ERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVL--EEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKSLPKAL*KFVNST-CQNEPFGDPQN 930
            +RR FF PS++IY GVAG YD+GP G  +K  ++  WR++FVL  ++ ++E++ P + PE V  ASGHVE FTD +V+    G  +RADHL+        E+ L + AE              LS  EL   I+E G+  P  +  L     FNL+F+T IGP     GY+RPE AQGIFV FK +Y    +++P   AQ+G+  RNE S  +AL +    T  + E F DP++
Sbjct:   14 KRRGFFWPSYEIYGGVAGFYDWGPLGHLLKRRIIEKWRRYFVLMHQDHVVEIETPVIGPEKVYIASGHVEHFTDPIVRCTSCGRTFRADHLV--------EEALGINAE-------------GLSVSELDRIIRERGLRCPVCQGELGRVETFNLLFRTQIGPYEGSVGYLRPELAQGIFVAFKRVYEAMRSRIPLGIAQVGRVGRNEISPRQALVRLREFTIMEMEYFIDPED 226          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_DEIRA (Glycyl-tRNA synthetase OS=Deinococcus radiodurans GN=glyQS PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 3.901e-34
Identity = 87/211 (41.23%), Postives = 119/211 (56.40%), Query Frame = 1
Query:  238 ERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNV-LAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKN--PLSDPYPFNLMFQTSIGPSGLIP--GYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            +RR F     +IY G+ G YDYGP G  +K+N+  A+WR +    +DM  +D   +    VL+ SGH   F+D M+ ++K    YR DHLLKD   +   K   +  E A     L+A L+   A+   A  KE G+  P +      +DP PFN+MF+T+IGP       GY+RPETAQGIF NFK++      +LPF  AQIG+AFRNE
Sbjct:   14 KRRGFIFQGSEIYGGLQGFYDYGPLGVELKNNIKAAWWRSNVYERDDMEGLDASIIMHRMVLRHSGHEATFSDPMIDNKKNNKRYRLDHLLKDQKADVQAKVAEIMGESADNFAALVAALNAKPAQA-SAAFKEAGVRDPFSGEVGEWTDPKPFNMMFRTTIGPVADEESYGYLRPETAQGIFTNFKNVVDSTSRRLPFGIAQIGKAFRNE 223          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_ARCFU (Glycyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=glyS PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 6.655e-34
Identity = 88/213 (41.31%), Postives = 115/213 (53.99%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEKS 861
            +   L RR F   SF+IY G+AG  DY P G  ++  +   WR++FV+ E   E+D P +  E V  ASGH   FTD+ ++ E  G  YRADH +K    EKL  ++    E   E+  +     DL   E G + K              DP P NLMF T+IGP     GY+RPETAQG+FV+FK L  +   KLPF  AQIG+A+RNE S
Sbjct:    6 IMEMLIRRGFLWQSFEIYGGMAGFIDYAPLGNNLRRKIENIWRKYFVINERAAEIDTPTIGIEEVFIASGHATSFTDVAIECENCGRVYRADHYVK----EKLGIEVDETVEAVKEVMEVY----DLKC-ECGGRFK--------------DPAPMNLMFSTTIGPGKGKKGYLRPETAQGMFVDFKRLANFFREKLPFGVAQIGRAYRNEIS 195          
The following BLAST results are available for this feature:
BLAST of DY270854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
SYG_PYRHO1.531e-3839.92Glycyl-tRNA synthetase OS=Pyrococcus horikoshii GN... [more]
SYG_METKA2.611e-3837.40Glycyl-tRNA synthetase OS=Methanopyrus kandleri GN... [more]
SYG_PYRKO2.210e-3740.74Glycyl-tRNA synthetase OS=Pyrococcus kodakaraensis... [more]
SYG_METTH2.210e-3736.51Glycyl-tRNA synthetase OS=Methanobacterium thermoa... [more]
SYG_THESM3.770e-3738.68Glycyl-tRNA synthetase OS=Thermococcus sibiricus (... [more]
SYG_PYRFU4.924e-3743.54Glycyl-tRNA synthetase OS=Pyrococcus furiosus GN=g... [more]
SYG_PYRAB2.444e-3643.06Glycyl-tRNA synthetase OS=Pyrococcus abyssi GN=gly... [more]
SYG_AERPE7.110e-3640.17Glycyl-tRNA synthetase OS=Aeropyrum pernix GN=glyS... [more]
SYG_DEIRA3.901e-3441.23Glycyl-tRNA synthetase OS=Deinococcus radiodurans ... [more]
SYG_ARCFU6.655e-3441.31Glycyl-tRNA synthetase OS=Archaeoglobus fulgidus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YP08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270854 ID=DY270854; Name=DY270854; organism=Citrus clementina; type=EST; length=1130bp
CTTCGGCGAACCCTAGCCGAGAAGCAATCGGCTGTCGACGCTCAAGGCAA
TGCCGTCAGAGCTCTCAAAGCCGCAAAAGCTTCCAAGTCCGAAATCGACG
CTGCTATTGAATCACTCAATCGATTGAAACTCGAGAAGTCATCGGTCGAA
AGGGAGCTCCAGAGTGTCGTTAGTGGTAGCGGCGGGGGTGCTTCTGTTAA
CAGGGAGGCTTTCCGTCAGACTGTCTTTAACACTCTTGAACGGCGTTTGT
TTTTTATTCCATCTTTCAAGATTTACCGTGGTGTTGCTGGTCTTTATGAT
TACGGGCCACCTGGCTGTGCCGTTAAGTCTAACGTTCTTGCTTTTTGGCG
TCAGCACTTTGTTCTGGAAGAGGATATGTTAGAGGTGGACTGCCCATGTG
TGACTCCTGAGGCTGTGTTGAAAGCGTCTGGTCATGTTGAAAAATTTACT
GACCTTATGGTTAAGGATGAGAAAATGGGGACCTGTTATCGTGCTGACCA
CTTGCTTAAGGATTTCTGTAATGAGAAGCTTGAGAAAGACCTTAGCTTAT
ATGCAGAGAAGGCTGCGGAATTGAGACATCTACTGGCAGTCTTGGATGAT
TTATCAGCCGAGGAGCTTGGTGCTAAGATCAAGGAGTATGGTATTACTGC
TCCTGACACAAAGAATCCGCTGTCTGATCCCTATCCATTCAACTTAATGT
TTCAAACATCAATTGGCCCCTCCGGGCTGATCCCTGGGTATATGCGCCCT
GAAACAGCACAAGGCATATTTGTGAATTTTAAAGATTTGTATTATTACAA
TGGAAACAAACTCCCTTTTGCTGCTGCCCAAATTGGGCAGGCTTTTAGGA
ATGAAAAATCCCTCCCCAAGGCCCTTTGAAAGTTCGTGAATTCCACTTGC
CAAAATGAACCCTTTGGTGACCCTCAGAACAATCCCACCCAAAATTTCAA
AAATTTGCAAATTTGGATTTCCTGAAGTTCCCAAGGGGAGGAAAAAATGT
CTCGGGAAATTCTGCCAAAAAGGATATCCCCTAAGGGGAAAGCTGTTTTT
CAAGGGAAAAAAAAAAACAAGGAAAATCTCTTGGGTTTTTTTTTTGGGGA
AAAAAAAATTTTTCCTTTTTCAAACAGGGG
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