DY270854

Overview
NameDY270854
Unique NameDY270854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAES (Glycyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=glyQS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.258e-24
Identity = 74/217 (34.10%), Postives = 113/217 (52.07%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFC-NEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+    + R F  P   IY G++  +DYGP G  +K+N+   W Q F+ +    + +D   +      +ASGH+  F D M+ ++     YRAD L++D+  NEK +++                + D LS +E+   I + GI  P +K    +D   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVQLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNIKKAWWQKFITQSPYNVGIDAAILMNPKTWEASGHLGNFNDPMIDNKDSKIRYRADKLIEDYMQNEKGDENF---------------IADGLSFDEMKKIIDDEGIVCPVSKTANWTDIRQFNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAEQ (Glycyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=glyQS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.258e-24
Identity = 74/217 (34.10%), Postives = 113/217 (52.07%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFC-NEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+    + R F  P   IY G++  +DYGP G  +K+N+   W Q F+ +    + +D   +      +ASGH+  F D M+ ++     YRAD L++D+  NEK +++                + D LS +E+   I + GI  P +K    +D   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVQLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNIKKAWWQKFITQSPYNVGIDAAILMNPKTWEASGHLGNFNDPMIDNKDSKIRYRADKLIEDYMQNEKGDENF---------------IADGLSFDEMKKIIDDEGIVCPVSKTANWTDIRQFNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MYCPE (Glycyl-tRNA synthetase OS=Mycoplasma penetrans GN=glyQS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.258e-24
Identity = 71/220 (32.27%), Postives = 116/220 (52.73%), Query Frame = 1
Query:  214 RQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVL-EEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIG----PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            ++T+ N  +   F   + +IY G+A  +D+GP G  +K+N+   W +HF+  +++M  +D   +    V KASGH++ F+D ++  ++  + +RAD L+ +   E++                     +   ++ L   I +  I  P+ K    ++   FNLMF TSIG       L+  Y+RPETAQGIF+NFK++      KLPF   QIG+AFRNE
Sbjct:    7 QETIVNHFKNYGFVYQNSEIYNGLANAWDFGPLGSLIKNNLKNLWLKHFIYSKKEMHLIDTNIILNPLVWKASGHIDNFSDPLIDCKECKSRFRADKLILENTKEEIN--------------------EQTDSDTLIKIISDNKIKCPNCKKSNWTEIRKFNLMFDTSIGVVDDKKDLV--YLRPETAQGIFINFKNIQRTQRQKLPFGVGQIGKAFRNE 204          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAAB (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=glyQS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.643e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNIGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAAW (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain MW2) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAAT (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAAS (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain MSSA476) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAAR (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain MRSA252) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAAN (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain N315) GN=glyQS PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAAM (Glycyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=glyQS PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.146e-24
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP-LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +    V +ASGH+  F D M+ ++     YRAD L++D+  + ++ D +  A             D LS E++   I + GI  P +K    ++   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 TIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQD-VKGDENFIA-------------DGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
The following BLAST results are available for this feature:
BLAST of DY270854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
SYG_STAES1.258e-2434.10Glycyl-tRNA synthetase OS=Staphylococcus epidermid... [more]
SYG_STAEQ1.258e-2434.10Glycyl-tRNA synthetase OS=Staphylococcus epidermid... [more]
SYG_MYCPE1.258e-2432.27Glycyl-tRNA synthetase OS=Mycoplasma penetrans GN=... [more]
SYG_STAAB1.643e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAW2.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAT2.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAS2.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAR2.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAN2.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]
SYG_STAAM2.146e-2434.26Glycyl-tRNA synthetase OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YP08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270854 ID=DY270854; Name=DY270854; organism=Citrus clementina; type=EST; length=1130bp
CTTCGGCGAACCCTAGCCGAGAAGCAATCGGCTGTCGACGCTCAAGGCAA
TGCCGTCAGAGCTCTCAAAGCCGCAAAAGCTTCCAAGTCCGAAATCGACG
CTGCTATTGAATCACTCAATCGATTGAAACTCGAGAAGTCATCGGTCGAA
AGGGAGCTCCAGAGTGTCGTTAGTGGTAGCGGCGGGGGTGCTTCTGTTAA
CAGGGAGGCTTTCCGTCAGACTGTCTTTAACACTCTTGAACGGCGTTTGT
TTTTTATTCCATCTTTCAAGATTTACCGTGGTGTTGCTGGTCTTTATGAT
TACGGGCCACCTGGCTGTGCCGTTAAGTCTAACGTTCTTGCTTTTTGGCG
TCAGCACTTTGTTCTGGAAGAGGATATGTTAGAGGTGGACTGCCCATGTG
TGACTCCTGAGGCTGTGTTGAAAGCGTCTGGTCATGTTGAAAAATTTACT
GACCTTATGGTTAAGGATGAGAAAATGGGGACCTGTTATCGTGCTGACCA
CTTGCTTAAGGATTTCTGTAATGAGAAGCTTGAGAAAGACCTTAGCTTAT
ATGCAGAGAAGGCTGCGGAATTGAGACATCTACTGGCAGTCTTGGATGAT
TTATCAGCCGAGGAGCTTGGTGCTAAGATCAAGGAGTATGGTATTACTGC
TCCTGACACAAAGAATCCGCTGTCTGATCCCTATCCATTCAACTTAATGT
TTCAAACATCAATTGGCCCCTCCGGGCTGATCCCTGGGTATATGCGCCCT
GAAACAGCACAAGGCATATTTGTGAATTTTAAAGATTTGTATTATTACAA
TGGAAACAAACTCCCTTTTGCTGCTGCCCAAATTGGGCAGGCTTTTAGGA
ATGAAAAATCCCTCCCCAAGGCCCTTTGAAAGTTCGTGAATTCCACTTGC
CAAAATGAACCCTTTGGTGACCCTCAGAACAATCCCACCCAAAATTTCAA
AAATTTGCAAATTTGGATTTCCTGAAGTTCCCAAGGGGAGGAAAAAATGT
CTCGGGAAATTCTGCCAAAAAGGATATCCCCTAAGGGGAAAGCTGTTTTT
CAAGGGAAAAAAAAAAACAAGGAAAATCTCTTGGGTTTTTTTTTTGGGGA
AAAAAAAATTTTTCCTTTTTCAAACAGGGG
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