DY270854

Overview
NameDY270854
Unique NameDY270854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_LYSSC (Glycyl-tRNA synthetase OS=Lysinibacillus sphaericus (strain C3-41) GN=glyQS PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.802e-24
Identity = 72/217 (33.18%), Postives = 112/217 (51.61%), Query Frame = 1
Query:  217 QTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLE-EDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDT-KNPLSDPYPFNLMFQTSIG--PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            +T+ +  + R F  P  +IY G+A  +DYGP G  +K+N+   W Q FV E E  + +D   +       ASGHV  F D M+  +     +RAD +++D    K ++                 ++D ++ +++   + +Y +  PD  K   +D   FNLMF+T  G   S     ++RPETAQGIFVNFK++      + PF  AQIG++FRNE
Sbjct:    7 ETIVSLAKHRGFVFPGSEIYGGLANTWDYGPLGVELKNNIKKAWWQKFVQESEHNVGIDAAILMNPKAWVASGHVGNFNDPMIDCKSCKARHRADKIIEDAALAKGDE----------------IIVDGMTFDQMKETMIKYDVVCPDCGKADFTDIRQFNLMFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKRTPFGIAQIGKSFRNE 207          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STAHJ (Glycyl-tRNA synthetase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=glyQS PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.243e-24
Identity = 76/218 (34.86%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  217 QTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAP--DTKNPLSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            +T+ +  + R F  P   IY G++  +DYGP G  +K+NV   W Q F+ +    + +D   +      +ASGH+  F D M+ ++     YRAD L++D+  +          EK  E      + D LS +E+   I + GI  P   T N  +D   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    6 ETIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKTWEASGHLGNFNDPMIDNKDSKIRYRADKLIEDYMQK----------EKGDEN----FIADGLSFDEMKRIIDDEGIVCPVSGTAN-WTDIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_UREPA (Glycyl-tRNA synthetase OS=Ureaplasma parvum GN=glyQS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.065e-23
Identity = 74/220 (33.64%), Postives = 118/220 (53.64%), Query Frame = 1
Query:  214 RQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEE-DMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKN-PLSDPYPFNLMFQTSIG----PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            ++ + N L+   F   + +IY G+A  +DYGP G  +K+N+   W + FV ++ +++ +D   +    V KASGH++ F+D ++  +   T YRAD L++ F      KD+               + ++ + EE    + ++ I  P  K    +D   FNLMF+T  G    P  ++  Y+RPETAQGIFVNFK++       LPF  AQIG++FRNE
Sbjct:    8 QEDLVNHLKSVGFVFANSEIYNGLANAWDYGPLGVLLKNNLKNLWWKEFVTKQKNIVGLDSAIILNPLVWKASGHLDNFSDPLIDCKSCKTRYRADKLIESF-----NKDIH--------------IAENSTNEEFMKVLNDHKIFCPTCKQFNWTDIRHFNLMFKTHQGVIEDPKNIV--YLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNE 206          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_UREP2 (Glycyl-tRNA synthetase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=glyQS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.065e-23
Identity = 74/220 (33.64%), Postives = 118/220 (53.64%), Query Frame = 1
Query:  214 RQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEE-DMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKN-PLSDPYPFNLMFQTSIG----PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            ++ + N L+   F   + +IY G+A  +DYGP G  +K+N+   W + FV ++ +++ +D   +    V KASGH++ F+D ++  +   T YRAD L++ F      KD+               + ++ + EE    + ++ I  P  K    +D   FNLMF+T  G    P  ++  Y+RPETAQGIFVNFK++       LPF  AQIG++FRNE
Sbjct:    8 QEDLVNHLKSVGFVFANSEIYNGLANAWDYGPLGVLLKNNLKNLWWKEFVTKQKNIVGLDSAIILNPLVWKASGHLDNFSDPLIDCKSCKTRYRADKLIESF-----NKDIH--------------IAENSTNEEFMKVLNDHKIFCPTCKQFNWTDIRHFNLMFKTHQGVIEDPKNIV--YLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNE 206          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_THETN (Glycyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=glyQS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.065e-23
Identity = 70/210 (33.33%), Postives = 114/210 (54.29%), Query Frame = 1
Query:  238 ERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDT-KNPLSDPYPFNLMFQTSIGPS--GLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            + R F  P  +IY G+A  +DYGP G  +K+N+   W + F+ E    + +D   +    V  ASGHV  F+D ++  ++  + +RAD L++D+  EK   D+S+               +  + E++   IKE+ +  P    +  ++   FNLMF+T +G +       ++RPETAQGIFVNFK++   +  K+PF   QIG++FRNE
Sbjct:   15 KNRGFVFPGSEIYGGLANTWDYGPLGVEMKNNIKRIWWKKFIQESPYNVGIDSAILMNREVWVASGHVASFSDPLMDCKECKSRFRADQLIEDYIKEK-GLDISI---------------EGWTNEQMMEFIKEHKVPCPKCGAHNFTEIRKFNLMFKTYVGVTEDSKSEVFLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_UREU1 (Glycyl-tRNA synthetase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=glyQS PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.391e-23
Identity = 73/223 (32.74%), Postives = 115/223 (51.57%), Query Frame = 1
Query:  199 NREAFRQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEE-DMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKN-PLSDPYPFNLMFQTSIG--PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            N+   ++ + N L+   F   + +IY G+A  +DYGP G  +K+N+   W + FV ++ D++ +D   +    V KASGH++ F+D ++  +     YRAD L++ F                      + + ++ S EE    + +Y I+ P  K    ++   FNLMF+T  G         Y+RPETAQGIFVNFK++       LPF  AQIG++FRNE
Sbjct:    3 NKFKTQEELVNHLKTVGFVFANSEIYNGLANAWDYGPLGVLLKNNLKNLWWKEFVTKQKDVVGLDSAIILNPLVWKASGHLDNFSDPLIDCKNCKARYRADKLIESFDEN-------------------IHIAENSSNEEFAKVLNDYEISCPTCKQFNWTEIRHFNLMFKTYQGVIEDAKNVVYLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNE 206          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MYCGA (Glycyl-tRNA synthetase OS=Mycoplasma gallisepticum GN=glyQS PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.391e-23
Identity = 76/220 (34.55%), Postives = 113/220 (51.36%), Query Frame = 1
Query:  205 EAFRQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEE-DMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIG--PSGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            E  +  + N L+   F   S +IY G+A  +DYGP G  +K+N+     +HFV  + DM  +D   +    V +ASGH++ F+D +V  +K  + YRAD L+++        D S+   +  +  +L  +L D   E    +   +           +    FNLMF+T  G     L   Y+RPETAQGIF+NFK++      KLPF  AQIG+AFRNE
Sbjct:    3 ELKQDQIVNFLKNYGFVYQSSEIYNGLANSWDYGPLGALLKNNIKQLLLKHFVFSQPDMKLLDSSIILNPLVWQASGHLDNFSDPLVDCKKCKSRYRADKLIEEL------NDDSIKITENTDPSYLEQILVDKKVECKKCESTNW-----------TKIRKFNLMFKTFQGVVEDSLNTIYLRPETAQGIFINFKNIVRTQRMKLPFGVAQIGKAFRNE 205          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MYCVP (Glycyl-tRNA synthetase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=glyQS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.816e-23
Identity = 72/217 (33.18%), Postives = 106/217 (48.85%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLA-FWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPD--TKNPLSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            TV N  +RR     S +IY G    +DYGP G  +K N+   +WR      +D++ +D   + P  V  ASGHVE F D +V+       +R DH+ + +  ++ +K +++  +  A                         I  PD  TK   ++P  FN+M +T +GP     G  Y+RPETAQGIFVNF ++      K PF   QIG++FRNE
Sbjct:   10 TVANLAKRRGLVFQSGEIYGGTKSAWDYGPLGVELKENIKRQWWRAVVTSRDDVVGLDSAIILPREVWVASGHVEVFNDPLVECLNCHKRHRQDHMQEAYAEKEAKKGVTVDPDAVAMTE----------------------IVCPDCGTKGQWTEPRDFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNE 204          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MYCTU (Glycyl-tRNA synthetase OS=Mycobacterium tuberculosis GN=glyQS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.816e-23
Identity = 77/217 (35.48%), Postives = 106/217 (48.85%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNV-LAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP--LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            TV N  +RR F  PS +IY G    +DYGP G  +K N+   +WR      +D++ +D   + P  V  ASGHV+ F D +V+       YRADHL+                 +A E +H     + L+            I  P+T  P   + P  FN+M +T +GP     G  Y+RPETAQGIFVNF ++      K PF   QIG++FRNE
Sbjct:   11 TVVNLAKRRGFVYPSGEIYGGTKSAWDYGPLGVELKENIKRQWWRSVVTGRDDVVGIDSSIILPREVWVASGHVDVFHDPLVESLITHKRYRADHLI-----------------EAYEAKHGHPPPNGLA-----------DIRDPETGEPGQWTQPREFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNE 199          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MYCBO (Glycyl-tRNA synthetase OS=Mycobacterium bovis GN=glyQS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.816e-23
Identity = 77/217 (35.48%), Postives = 106/217 (48.85%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNV-LAFWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP--LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            TV N  +RR F  PS +IY G    +DYGP G  +K N+   +WR      +D++ +D   + P  V  ASGHV+ F D +V+       YRADHL+                 +A E +H     + L+            I  P+T  P   + P  FN+M +T +GP     G  Y+RPETAQGIFVNF ++      K PF   QIG++FRNE
Sbjct:   11 TVVNLAKRRGFVYPSGEIYGGTKSAWDYGPLGVELKENIKRQWWRSVVTGRDDVVGIDSSIILPREVWVASGHVDVFHDPLVESLITHKRYRADHLI-----------------EAYEAKHGHPPPNGLA-----------DIRDPETGEPGQWTQPREFNMMLKTYLGPIETEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNE 199          
The following BLAST results are available for this feature:
BLAST of DY270854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
SYG_LYSSC2.802e-2433.18Glycyl-tRNA synthetase OS=Lysinibacillus sphaericu... [more]
SYG_STAHJ6.243e-2434.86Glycyl-tRNA synthetase OS=Staphylococcus haemolyti... [more]
SYG_UREPA1.065e-2333.64Glycyl-tRNA synthetase OS=Ureaplasma parvum GN=gly... [more]
SYG_UREP21.065e-2333.64Glycyl-tRNA synthetase OS=Ureaplasma parvum serova... [more]
SYG_THETN1.065e-2333.33Glycyl-tRNA synthetase OS=Thermoanaerobacter tengc... [more]
SYG_UREU11.391e-2332.74Glycyl-tRNA synthetase OS=Ureaplasma urealyticum s... [more]
SYG_MYCGA1.391e-2334.55Glycyl-tRNA synthetase OS=Mycoplasma gallisepticum... [more]
SYG_MYCVP1.816e-2333.18Glycyl-tRNA synthetase OS=Mycobacterium vanbaaleni... [more]
SYG_MYCTU1.816e-2335.48Glycyl-tRNA synthetase OS=Mycobacterium tuberculos... [more]
SYG_MYCBO1.816e-2335.48Glycyl-tRNA synthetase OS=Mycobacterium bovis GN=g... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YP08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270854 ID=DY270854; Name=DY270854; organism=Citrus clementina; type=EST; length=1130bp
CTTCGGCGAACCCTAGCCGAGAAGCAATCGGCTGTCGACGCTCAAGGCAA
TGCCGTCAGAGCTCTCAAAGCCGCAAAAGCTTCCAAGTCCGAAATCGACG
CTGCTATTGAATCACTCAATCGATTGAAACTCGAGAAGTCATCGGTCGAA
AGGGAGCTCCAGAGTGTCGTTAGTGGTAGCGGCGGGGGTGCTTCTGTTAA
CAGGGAGGCTTTCCGTCAGACTGTCTTTAACACTCTTGAACGGCGTTTGT
TTTTTATTCCATCTTTCAAGATTTACCGTGGTGTTGCTGGTCTTTATGAT
TACGGGCCACCTGGCTGTGCCGTTAAGTCTAACGTTCTTGCTTTTTGGCG
TCAGCACTTTGTTCTGGAAGAGGATATGTTAGAGGTGGACTGCCCATGTG
TGACTCCTGAGGCTGTGTTGAAAGCGTCTGGTCATGTTGAAAAATTTACT
GACCTTATGGTTAAGGATGAGAAAATGGGGACCTGTTATCGTGCTGACCA
CTTGCTTAAGGATTTCTGTAATGAGAAGCTTGAGAAAGACCTTAGCTTAT
ATGCAGAGAAGGCTGCGGAATTGAGACATCTACTGGCAGTCTTGGATGAT
TTATCAGCCGAGGAGCTTGGTGCTAAGATCAAGGAGTATGGTATTACTGC
TCCTGACACAAAGAATCCGCTGTCTGATCCCTATCCATTCAACTTAATGT
TTCAAACATCAATTGGCCCCTCCGGGCTGATCCCTGGGTATATGCGCCCT
GAAACAGCACAAGGCATATTTGTGAATTTTAAAGATTTGTATTATTACAA
TGGAAACAAACTCCCTTTTGCTGCTGCCCAAATTGGGCAGGCTTTTAGGA
ATGAAAAATCCCTCCCCAAGGCCCTTTGAAAGTTCGTGAATTCCACTTGC
CAAAATGAACCCTTTGGTGACCCTCAGAACAATCCCACCCAAAATTTCAA
AAATTTGCAAATTTGGATTTCCTGAAGTTCCCAAGGGGAGGAAAAAATGT
CTCGGGAAATTCTGCCAAAAAGGATATCCCCTAAGGGGAAAGCTGTTTTT
CAAGGGAAAAAAAAAAACAAGGAAAATCTCTTGGGTTTTTTTTTTGGGGA
AAAAAAAATTTTTCCTTTTTCAAACAGGGG
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