DY270854

Overview
NameDY270854
Unique NameDY270854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_CLOPH (Glycyl-tRNA synthetase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyQS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.816e-23
Identity = 73/208 (35.10%), Postives = 111/208 (53.37%), Query Frame = 1
Query:  244 RLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDT-KNPLSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            R F  P  +IY G+A  +DYG  G  +K+NV   W   F+ +    + VDC  +       ASGH+  F+D ++  ++    +RAD +++D+  EK   +L+L              +D  S EE+ A I++  I  P   K+  +D   FNLMF+T  G +       Y+RPETAQGIFVNFK++   +  K+PF   Q+G++FRNE
Sbjct:   15 RGFVYPGSEIYGGLANTWDYGNLGVELKNNVKKAWWTKFIQQNPYNVGVDCAILMNPQTWVASGHLGSFSDPLMDCKECRERFRADKIIEDYATEK---NLTLEGS-----------VDAWSHEEMSAYIEKNNIPCPTCGKHNFTDIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_ALKOO (Glycyl-tRNA synthetase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyQS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.372e-23
Identity = 70/221 (31.67%), Postives = 116/221 (52.49%), Query Frame = 1
Query:  205 EAFRQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDT-KNPLSDPYPFNLMFQTSIGPS--GLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            E   + + +  + R F  P  +IY G+A  +DYGP G  +K+NV   W + F+ +    + +D   +      +ASGH+  F+D ++  +K  + +RAD L++D+ + + E+                 V+D  S +++   I+E  I  P+      +D   FNLMF+T  G +       ++RPETAQGIFVNFK++   +  K+PF   QIG++FRNE
Sbjct:    4 EKTMEKIVSLAKSRGFIFPGSEIYGGLANTWDYGPLGVELKNNVKKAWWKKFIQQSPYNVGLDAAILMNPKTWEASGHIGGFSDPLMDCKKCRSRFRADKLIEDYMHSQNEE----------------TVVDGWSNQQMKTYIEEKEIVCPECGAKDFTDIRQFNLMFKTFQGVTEDSSTEIFLRPETAQGIFVNFKNVLRTSRKKVPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_CORGL (Glycyl-tRNA synthetase OS=Corynebacterium glutamicum GN=glyQS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.098e-23
Identity = 76/223 (34.08%), Postives = 109/223 (48.88%), Query Frame = 1
Query:  202 REAFRQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLA-FWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP--LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            +++   TV N  +RR    P  +IY G    +DYGP G  +K N+   +WR       D++ VD   + P  V   SGHVE FTD +V+       YRADHLL+ +                 E +H    ++ L+            I  P+T  P   ++P  F+ + +T +GP     G  Y+RPETAQGIFVNFK++   +  K PF  A IG++FRNE
Sbjct:    3 QQSIIDTVVNLCKRRGLVYPCGEIYGGTRSAWDYGPLGVELKENIKRQWWRSMVTSRPDVVGVDTSVILPRQVWVTSGHVEVFTDPLVESLNTHKRYRADHLLEQY-----------------EEKHGHPPVNGLA-----------DINDPETGQPGNWTEPKAFSGLLKTFLGPVDDEEGLHYLRPETAQGIFVNFKNVMNTSRMKPPFGIANIGKSFRNE 197          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_STACT (Glycyl-tRNA synthetase OS=Staphylococcus carnosus (strain TM300) GN=glyQS PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.047e-23
Identity = 75/218 (34.40%), Postives = 114/218 (52.29%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFC-NEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAP--DTKNPLSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            +V    + R F  P  +IY G++  +DYGP G  +K+N+   W + F+ +    + +D   +      +ASGH+  F D M+ ++     YRAD L++D+  NEK +++                + D LS +E+   I E GI  P   T N  +D   FNLMF+T  G +       ++RPETAQGIFVN+K++      KLPF   QIG++FRNE
Sbjct:    7 SVVQLAKHRGFVFPGSEIYGGLSNTWDYGPLGVELKNNIKQAWWKKFISQSPYNVGLDAAILMNPRTWEASGHLGNFNDPMIDNKDSKIRYRADKLIEDYMQNEKGDENF---------------IADGLSFDEMKRIIDEEGIKDPVSGTSN-WTDIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_MYCS5 (Glycyl-tRNA synthetase OS=Mycoplasma synoviae (strain 53) GN=glyQS PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.047e-23
Identity = 70/218 (32.11%), Postives = 116/218 (53.21%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDMLEV-DCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKD-FCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLIPG-----YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            + N L+   F     +IY GVA  +DYGP G  +K N+L +W++ FV  ++ + + D   +    V +ASGHV  F D +++++     YRAD ++++ F NE + K                     ++ E++   +++   +  ++K   S+   FNLMF+T     G++       Y+RPETAQGIF+NFK++      KLPF  AQ+G++FRNE
Sbjct:    9 LINHLKNAGFVFQGSEIYGGVANTWDYGPLGVLLKDNILNYWKKFFVFSQNNIYMLDSKILLNSKVWEASGHVGNFNDPLIENKINNKRYRADKVIEELFPNENVAK---------------------MTHEQMQEFLQKNVTSYDNSKCAWSEIKKFNLMFETF---QGVVDDKKKAIYLRPETAQGIFINFKNIQRAMRAKLPFGVAQVGKSFRNE 202          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_EUBR3 (Glycyl-tRNA synthetase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyQS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.285e-23
Identity = 71/216 (32.87%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEK-LEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDT-KNPLSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            +    + R F  P  +IY G+A  +DYG  G  +K+NV   W + F+ E    + VDC  +       ASGH+  F+D ++  ++    +RAD +++DF  +  +E + S+               D  + E++   IKE+ +  P   K+  +D   FNLMF+T  G +       Y+RPETAQGIFVNFK++   +  K+PF   Q+G++FRNE
Sbjct:    8 IVQVAKARGFVYPGSEIYGGLANTWDYGNLGVELKNNVKRAWWKKFIQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCKECHERFRADKIIEDFAQDNGIELETSV---------------DGWTNEQMVDFIKEHNVPCPSCGKHNFTDIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_EUBE2 (Glycyl-tRNA synthetase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=glyQS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.903e-23
Identity = 76/221 (34.39%), Postives = 113/221 (51.13%), Query Frame = 1
Query:  205 EAFRQTVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDT-KNPLSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            E   + + +  + R F  P  +IY G+A  +DYG  G  +K+NV   W Q FV E    + VDC  +       ASGH+  F+D ++  ++    +RAD L++D+ +E    DL                +D  + E++   I E  I  P   K+  +D   FNLMF+T  G +       Y+RPETAQGIFVNFK++   +  K+PF   QIG++FRNE
Sbjct:    2 EKTMEKIVSLAKARGFVYPGSEIYGGLANTWDYGNLGVELKNNVKKAWWQKFVQESPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCKECHERFRADKLIEDWADEN-SYDLG-------------GSVDGWTQEQMKNFIDEKNICCPSCGKHNFTDIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_CLOAB (Glycyl-tRNA synthetase OS=Clostridium acetobutylicum GN=glyQS PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.015e-23
Identity = 75/215 (34.88%), Postives = 113/215 (52.56%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEEDM-LEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDT-KNPLSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            + +  + R F     +IY G+A  +DYGP G  +K+NV   W + FV +    + +DC  +    V  ASGH+  F+D ++  ++  + +RAD +++D+  E+            AE+    A  D  S E+L   IK+  I  P   K   +    FNLMF+T  G +       Y+RPETAQGIFVNFK++   +  K+PF   QIG+AFRNE
Sbjct:   10 IVSLAKNRGFVFAGSEIYGGLANSWDYGPLGVELKNNVKKLWWKKFVQDNTYNVGLDCAILMNSEVWVASGHLGGFSDPLMDCKECKSRFRADKIVEDYLTEQ-----------GAEV----ASADGWSNEKLENFIKDKHIKCPKCGKENFTSIRKFNLMFKTFQGVTEDASSEIYLRPETAQGIFVNFKNVQRSSRKKVPFGIGQIGKAFRNE 209          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_PROAC (Glycyl-tRNA synthetase OS=Propionibacterium acnes GN=glyQS PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.177e-22
Identity = 75/218 (34.40%), Postives = 106/218 (48.62%), Query Frame = 1
Query:  223 VFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLA-FWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPD--TKNPLSDPYPFNLMFQTSIGP----SGLIPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            V N  +RR F  P  +IY G    +DYGP G  +K N+   +WR      +D++ +D   + P  V  ASGHV  F D + +        RADHL                 ++    +H +A  D +S EE         +  P+   K   ++P  FN+M +T +GP    SGL   Y+RPETAQGIFVNF+++      K PF  AQ G++FRNE
Sbjct:   19 VINLCKRRGFVFPCGEIYGGTRAAWDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECLSCHKRMRADHL-----------------QEGHAAKHGIADPDSISLEE---------VNCPNCGNKGQWTEPRDFNMMLKTYLGPVEDKSGL--HYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNE 208          
BLAST of DY270854 vs. ExPASy Swiss-Prot
Match: SYG_NOCFA (Glycyl-tRNA synthetase OS=Nocardia farcinica GN=glyQS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.177e-22
Identity = 76/217 (35.02%), Postives = 107/217 (49.31%), Query Frame = 1
Query:  220 TVFNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLA-FWRQHFVLEEDMLEVDCPCVTPEAVLKASGHVEKFTDLMVKDEKMGTCYRADHLLKDFCNEKLEKDLSLYAEKAAELRHLLAVLDDLSAEELGAKIKEYGITAPDTKNP--LSDPYPFNLMFQTSIGPSGLIPG--YMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNE 855
            TV N  +RR    P  +IY G    +DYGP G  +K N+   +WR      ED++ +D   + P  V +ASGHV  FTD +V+       YRADHLL+ +     EK     A   A++R                         P+T  P   ++P  F+ + +T +GP     G  Y+RPETAQGIF+N+K++      K PF  AQIG++FRNE
Sbjct:   14 TVANLAKRRGLVYPCGEIYGGTKSAWDYGPLGVELKENIKRQWWRSMVTSREDVVGLDSSVILPRQVWEASGHVATFTDPLVESLITHKRYRADHLLEAY----EEKHGHPPANGLADIRD------------------------PETGEPGRWTEPRNFSGLLKTFLGPVDDEEGLHYLRPETAQGIFINYKNVETTARKKPPFGIAQIGKSFRNE 202          
The following BLAST results are available for this feature:
BLAST of DY270854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
SYG_CLOPH1.816e-2335.10Glycyl-tRNA synthetase OS=Clostridium phytoferment... [more]
SYG_ALKOO2.372e-2331.67Glycyl-tRNA synthetase OS=Alkaliphilus oremlandii ... [more]
SYG_CORGL3.098e-2334.08Glycyl-tRNA synthetase OS=Corynebacterium glutamic... [more]
SYG_STACT4.047e-2334.40Glycyl-tRNA synthetase OS=Staphylococcus carnosus ... [more]
SYG_MYCS54.047e-2332.11Glycyl-tRNA synthetase OS=Mycoplasma synoviae (str... [more]
SYG_EUBR35.285e-2332.87Glycyl-tRNA synthetase OS=Eubacterium rectale (str... [more]
SYG_EUBE26.903e-2334.39Glycyl-tRNA synthetase OS=Eubacterium eligens (str... [more]
SYG_CLOAB9.015e-2334.88Glycyl-tRNA synthetase OS=Clostridium acetobutylic... [more]
SYG_PROAC1.177e-2234.40Glycyl-tRNA synthetase OS=Propionibacterium acnes ... [more]
SYG_NOCFA1.177e-2235.02Glycyl-tRNA synthetase OS=Nocardia farcinica GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YP08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270854 ID=DY270854; Name=DY270854; organism=Citrus clementina; type=EST; length=1130bp
CTTCGGCGAACCCTAGCCGAGAAGCAATCGGCTGTCGACGCTCAAGGCAA
TGCCGTCAGAGCTCTCAAAGCCGCAAAAGCTTCCAAGTCCGAAATCGACG
CTGCTATTGAATCACTCAATCGATTGAAACTCGAGAAGTCATCGGTCGAA
AGGGAGCTCCAGAGTGTCGTTAGTGGTAGCGGCGGGGGTGCTTCTGTTAA
CAGGGAGGCTTTCCGTCAGACTGTCTTTAACACTCTTGAACGGCGTTTGT
TTTTTATTCCATCTTTCAAGATTTACCGTGGTGTTGCTGGTCTTTATGAT
TACGGGCCACCTGGCTGTGCCGTTAAGTCTAACGTTCTTGCTTTTTGGCG
TCAGCACTTTGTTCTGGAAGAGGATATGTTAGAGGTGGACTGCCCATGTG
TGACTCCTGAGGCTGTGTTGAAAGCGTCTGGTCATGTTGAAAAATTTACT
GACCTTATGGTTAAGGATGAGAAAATGGGGACCTGTTATCGTGCTGACCA
CTTGCTTAAGGATTTCTGTAATGAGAAGCTTGAGAAAGACCTTAGCTTAT
ATGCAGAGAAGGCTGCGGAATTGAGACATCTACTGGCAGTCTTGGATGAT
TTATCAGCCGAGGAGCTTGGTGCTAAGATCAAGGAGTATGGTATTACTGC
TCCTGACACAAAGAATCCGCTGTCTGATCCCTATCCATTCAACTTAATGT
TTCAAACATCAATTGGCCCCTCCGGGCTGATCCCTGGGTATATGCGCCCT
GAAACAGCACAAGGCATATTTGTGAATTTTAAAGATTTGTATTATTACAA
TGGAAACAAACTCCCTTTTGCTGCTGCCCAAATTGGGCAGGCTTTTAGGA
ATGAAAAATCCCTCCCCAAGGCCCTTTGAAAGTTCGTGAATTCCACTTGC
CAAAATGAACCCTTTGGTGACCCTCAGAACAATCCCACCCAAAATTTCAA
AAATTTGCAAATTTGGATTTCCTGAAGTTCCCAAGGGGAGGAAAAAATGT
CTCGGGAAATTCTGCCAAAAAGGATATCCCCTAAGGGGAAAGCTGTTTTT
CAAGGGAAAAAAAAAAACAAGGAAAATCTCTTGGGTTTTTTTTTTGGGGA
AAAAAAAATTTTTCCTTTTTCAAACAGGGG
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