DY270865

Overview
NameDY270865
Unique NameDY270865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1223
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1_DICDI (RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.572e-14
Identity = 33/89 (37.08%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  104 KMKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            K K ++ +W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+ S+     CP+  R+ +F+
Sbjct:   15 KKKFEVKRWNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEECTVAWGICNHAFHFHCISRWLKSRQV---CPLDNRDWEFQ 100          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1_MOUSE (RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.120e-13
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  104 KMKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            K + ++ +W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+ ++     CP+  RE +F+
Sbjct:   19 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQ 104          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1_HUMAN (RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.120e-13
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  104 KMKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            K + ++ +W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+ ++     CP+  RE +F+
Sbjct:   19 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQ 104          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.910e-13
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 2
Query:  104 KMKVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            K + ++ +W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+ ++     CP+  RE  F+
Sbjct:   19 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWDFQ 104          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX2_MOUSE (RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.556e-13
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 2
Query:  125 QWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPG--DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRE 343
            +W+AVA W+WD + +TC ICR+     C  C+     +DC ++WG CNH+FH  C+  WV        CP+C+++
Sbjct:   34 KWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQD 105          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX2_HUMAN (RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.556e-13
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 2
Query:  125 QWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPG--DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRE 343
            +W+AVA W+WD + +TC ICR+     C  C+     +DC ++WG CNH+FH  C+  WV        CP+C+++
Sbjct:   34 KWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQD 105          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.111e-12
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 2
Query:  110 KVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            + +I +W AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+ ++     CP+   E +F+
Sbjct:   31 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQ 114          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1_YEAST (RING-box protein HRT1 OS=Saccharomyces cerevisiae GN=HRT1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.758e-12
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 2
Query:   98 ETKMK-VKILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPG-----DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPM 331
            ETK K  +I +W AVA W+WD   + C ICR      C +C+        ++C   WG CNHAFHLHCI KW+ ++     CP+
Sbjct:   29 ETKKKRFEIKKWTAVAFWSWDIAVDNCAICRNHIMEPCIECQPKAMTDTDNECVAAWGVCNHAFHLHCINKWIKTRDA---CPL 109          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.787e-11
Identity = 30/87 (34.48%), Postives = 46/87 (52.87%), Query Frame = 2
Query:  110 KVKILQWHAVASWTWDAQDETCGICRMAFDGCCPDC-----KLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRERQFK 355
            + ++ +W AVA W WD   + C ICR      C +C         ++C + WG CNHAFH HCI +W+ ++     CP+   E +F+
Sbjct:   28 RFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDVCEWEFQ 111          
BLAST of DY270865 vs. ExPASy Swiss-Prot
Match: RBX1B_DROME (RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.982e-11
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 2
Query:  119 ILQWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPG----DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRE 343
            + +W A A W WD   + C ICR      C +C+       D+C + WG CNHAFH HCI +W+ ++     CP+  +E
Sbjct:   39 VKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQADPNANQDECTVAWGECNHAFHYHCIARWLKTRLV---CPLDNKE 114          
The following BLAST results are available for this feature:
BLAST of DY270865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RBX1_DICDI8.572e-1437.08RING-box protein 1 OS=Dictyostelium discoideum GN=... [more]
RBX1_MOUSE1.120e-1335.96RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV... [more]
RBX1_HUMAN1.120e-1335.96RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV... [more]
RBX1A_DROME1.910e-1335.96RING-box protein 1A OS=Drosophila melanogaster GN=... [more]
RBX2_MOUSE5.556e-1338.67RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV... [more]
RBX2_HUMAN5.556e-1338.67RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV... [more]
RBX1A_ARATH2.111e-1235.63RING-box protein 1a OS=Arabidopsis thaliana GN=RBX... [more]
RBX1_YEAST2.758e-1241.67RING-box protein HRT1 OS=Saccharomyces cerevisiae ... [more]
RBX1B_ARATH1.787e-1134.48RING-box protein 1b OS=Arabidopsis thaliana GN=RBX... [more]
RBX1B_DROME3.982e-1136.71RING-box protein 1B OS=Drosophila melanogaster GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270865 ID=DY270865; Name=DY270865; organism=Citrus clementina; type=EST; length=1223bp
CCTAATTTCAATTCTCCCGTAACCATAAAATTAATTTCAGGAAATTTGTC
AAGAATAATTCAGTTCGCCGTAACAACAGTCGAGTTCTGATTCGTGGGAG
ACGAAGATGAAAGTCAAGATCTTGCAGTGGCATGCTGTTGCTTCATGGAC
GTGGGATGCACAAGATGAAACATGTGGAATTTGCCGGATGGCCTTTGATG
GCTGTTGTCCTGATTGTAAACTACCCGGTGATGATTGCCCATTAATTTGG
GGTGCCTGCAACCATGCATTCCATCTTCATTGCATCTTGAAGTGGGTGAA
TTCTCAAACTCCTCAAGCACATTGTCCCATGTGCCGAAGGGAACGGCAAT
TCAAAGGATCAGAATGAGTACGGTTGAAGGCGAATCTACAAGCATCCAAA
CGTGCCTGCTATGAAACCTTCCAGCCCTTCTAGCTCTACAATCTTGATGA
GGAATTTGACTTCCATTTAACTTCACATTGAATTGCTCAGTATACTAAGA
AAGCAATGGCCAGTTTTACATCCATTACCTAAACTCGCGTGCAGCATGCA
TGATACATTTACGTAAGCACCTTGCATGCCAAACGCCTCCAAATCCAGTC
CACGCACAGAATACCCTACCGTCTCCCCCAAGCAAACCCGAAACAAGTTC
TGGCGGAATGATTAGTTTGTCAACATAGTAACACATACACTGAGACTGAG
TTCATTAACACGTCACACGCGCTTCCTTCCAAATCATCATCATCTCGTGA
AACCATAATCTTCACACTGGACTCTTCTACACTTCCCTCCCATTCCGCTC
TTCATAATACTAATCAGATATGCGACACTTGTTTCGATCTGCATGTCTCA
TCCTATGCCCCAAAATCACTCCTTCGTCATAGTCACCGCATAGTCGAGTT
AGAACATTCTCTTTATTGCTTATTTTTTTATCTTTCATCTCTCTGTCCAT
CTCCCCTCACTCCTTACCTCCTATACCCAGTAATACTCCTCCTCAAAGAC
AACTCACGTCTTTCACGACTACACAACACGACCCCAACCTCTCTGTATAT
AATATGATCTCGCCTCCTTGCCCTTTTTGCTCTATTCCTTTACCCTTTCT
GTCCCTCATCCTTCTCCCCCATGCATATCACCAACTTCCTTTCCTTAGCT
GCACAATGCACCACTCACATAGGTAGGCGGTATTACTTGTCATTATACTC
CTGTTCTTCACCAATGTTTTCAC
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