DY270874

Overview
NameDY270874
Unique NameDY270874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1262
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_SALNS (50S ribosomal protein L7/L12 OS=Salmonella newport (strain SL254) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ +S +S+++V++L   +  K G+     + V                               FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_SALHS (50S ribosomal protein L7/L12 OS=Salmonella heidelberg (strain SL476) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ +S +S+++V++L   +  K G+     + V                               FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_SALG2 (50S ribosomal protein L7/L12 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ +S +S+++V++L   +  K G+     + V                               FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_SALEP (50S ribosomal protein L7/L12 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ +S +S+++V++L   +  K G+     + V                               FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_SALDC (50S ribosomal protein L7/L12 OS=Salmonella dublin (strain CT_02021853) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ +S +S+++V++L   +  K G+     + V                               FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_SALCH (50S ribosomal protein L7/L12 OS=Salmonella choleraesuis GN=rplL PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ +S +S+++V++L   +  K G+     + V                               FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_SALA4 (50S ribosomal protein L7/L12 OS=Salmonella agona (strain SL483) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ +S +S+++V++L   +  K G+     + V                               FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA------------------GPAEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_LISMF (50S ribosomal protein L7/L12 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 2 
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +  I+  +   S++E+ DL   +  + G+     + V   G   +                       F ++L   G ++K+KVIK VR  TGLGLKE+KELV+  P  LK GV K+EA++I AKL+EVGA V ++
Sbjct:    5 IEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAAGGAAAEQTE-------------------FTVELASAG-DSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKEEAEEIKAKLEEVGANVEVK 120
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_LISMC (50S ribosomal protein L7/L12 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 2 
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +  I+  +   S++E+ DL   +  + G+     + V   G   +                       F ++L   G ++K+KVIK VR  TGLGLKE+KELV+  P  LK GV K+EA++I AKL+EVGA V ++
Sbjct:    5 IEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAAGGAAAEQTE-------------------FTVELASAG-DSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKEEAEEIKAKLEEVGANVEVK 120
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_LACS1 (50S ribosomal protein L7/L12 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 36/68 (52.94%), Postives = 55/68 (80.88%), Query Frame = 2 
Query:  350 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            FD++L   G+ AK+KVIK V+  TGLGLK++K LV+  P+++K GV KDEA+++ AKL+EVGA+V+++
Sbjct:   56 FDVELTDAGS-AKVKVIKAVKDITGLGLKDAKGLVDGAPSVIKEGVAKDEAEELKAKLEEVGAKVTLK 122
The following BLAST results are available for this feature:
BLAST of DY270874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
RL7_SALNS6.372e-1233.0850S ribosomal protein L7/L12 OS=Salmonella newport... [more]
RL7_SALHS6.372e-1233.0850S ribosomal protein L7/L12 OS=Salmonella heidelb... [more]
RL7_SALG26.372e-1233.0850S ribosomal protein L7/L12 OS=Salmonella gallina... [more]
RL7_SALEP6.372e-1233.0850S ribosomal protein L7/L12 OS=Salmonella enterit... [more]
RL7_SALDC6.372e-1233.0850S ribosomal protein L7/L12 OS=Salmonella dublin ... [more]
RL7_SALCH6.372e-1233.0850S ribosomal protein L7/L12 OS=Salmonella cholera... [more]
RL7_SALA46.372e-1233.0850S ribosomal protein L7/L12 OS=Salmonella agona (... [more]
RL7_LISMF6.372e-1233.8250S ribosomal protein L7/L12 OS=Listeria monocytog... [more]
RL7_LISMC6.372e-1233.8250S ribosomal protein L7/L12 OS=Listeria monocytog... [more]
RL7_LACS16.372e-1252.9450S ribosomal protein L7/L12 OS=Lactobacillus sali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270874 ID=DY270874; Name=DY270874; organism=Citrus clementina; type=EST; length=1262bp
GAGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCT
CCCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATT
TCGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGC
CTCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACC
TGGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATG
TGCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAG
AGGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGT
TCGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATT
AAGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTT
GGTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGG
CTGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATG
GAGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCA
AGACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCT
ATATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAA
TACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATC
ATTTTAGGCCAACTTTTCTCTTTTTTTTTTGCCTTAATTTTTATTCTTAA
AATTTCATACAACTTCTGTGGAACTGGATTCTGATGACGGTTTCAGTTTA
TAAAAAATCTTTTGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
ACTTTCCTTGGACAAGTTTGGCATTTAAAAAAAGCTTGCTTAATAATTTT
TTTGAAAGAAAAGGGTCCAATACGTTAAAAAAAAAATATAATTGGCCTCC
CCCCGGAAATTCCCTAATTAGGGGAGTCAAAATAAAGGGGGCAATAAGGG
TTTCCGGGGGCACCCCGGGGCCCCGGGTTCCAAAAAACTCCTGGAAGTGT
TAATTGGGGAAAAAAAAAAAAAAATAATTTCACCTCGGTTGTTAAAAAAA
AAAACCCCCCCCCGGGCCATACAAAAAGAAAGAAAGTGCCCCTATTTTTT
TTTTTTCTTTAATCTCGGGGGGAAATATTATAAAAAAATAAACCTCCAAA
ATTTTTTTTTTT
back to top