DY270874

Overview
NameDY270874
Unique NameDY270874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1262
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_HELPY (50S ribosomal protein L7/L12 OS=Helicobacter pylori GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +++ I  LS++E+ +L  +   K G+   P +       G +                       F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:    8 VLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAGAAVAGGAAAESEEKTE--------------FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_HELPS (50S ribosomal protein L7/L12 OS=Helicobacter pylori (strain Shi470) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +++ I  LS++E+ +L  +   K G+   P +       G +                       F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:    8 VLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTE--------------FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_HELPJ (50S ribosomal protein L7/L12 OS=Helicobacter pylori J99 GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +++ I  LS++E+ +L  +   K G+   P +       G +                       F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:    8 VLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTE--------------FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_HELPH (50S ribosomal protein L7/L12 OS=Helicobacter pylori (strain HPAG1) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +++ I  LS++E+ +L  +   K G+   P +       G +                       F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:    8 VLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTE--------------FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_HELPG (50S ribosomal protein L7/L12 OS=Helicobacter pylori (strain G27) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +++ I  LS++E+ +L  +   K G+   P +       G +                       F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:    8 VLEYIGSLSVLELAELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTE--------------FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_HELP2 (50S ribosomal protein L7/L12 OS=Helicobacter pylori (strain P12) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +++ I  LS++E+ +L  +   K G+   P +       G +                       F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:    8 VLEYIGSLSVLELAELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTE--------------FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_HELAH (50S ribosomal protein L7/L12 OS=Helicobacter acinonychis (strain Sheeba) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +++ I  LS++E+ +L  +   K G+   P +       G +                       F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:    8 VLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAVAESEEKTD--------------FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEIK 125
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_CITK8 (50S ribosomal protein L7/L12 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.372e-12
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 2 
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ +S +S+++V++L   +  K G+     + V    +  +                       FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPVEAAEEKTE------------------FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_THEPX (50S ribosomal protein L7/L12 OS=Thermoanaerobacter sp. (strain X514) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.322e-12
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 2 
Query:  350 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            FD+ L+  G++ K+KVIK VR  TGLGLKE+K+LVE  P  +K GV+KDEA++I AK +EVGA+V ++
Sbjct:   59 FDVILQEVGSD-KIKVIKVVREVTGLGLKEAKDLVESAPKPVKEGVSKDEANQIKAKFEEVGAKVEIK 125
[Close]
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_THEP3 (50S ribosomal protein L7/L12 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.322e-12
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 2 
Query:  350 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            FD+ L+  G++ K+KVIK VR  TGLGLKE+K+LVE  P  +K GV+KDEA++I AK +EVGA+V ++
Sbjct:   59 FDVILQEVGSD-KIKVIKVVREVTGLGLKEAKDLVESAPKPVKEGVSKDEANQIKAKFEEVGAKVEIK 125
The following BLAST results are available for this feature:
BLAST of DY270874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
RL7_HELPY6.372e-1235.3450S ribosomal protein L7/L12 OS=Helicobacter pylor... [more]
RL7_HELPS6.372e-1235.3450S ribosomal protein L7/L12 OS=Helicobacter pylor... [more]
RL7_HELPJ6.372e-1235.3450S ribosomal protein L7/L12 OS=Helicobacter pylor... [more]
RL7_HELPH6.372e-1235.3450S ribosomal protein L7/L12 OS=Helicobacter pylor... [more]
RL7_HELPG6.372e-1235.3450S ribosomal protein L7/L12 OS=Helicobacter pylor... [more]
RL7_HELP26.372e-1235.3450S ribosomal protein L7/L12 OS=Helicobacter pylor... [more]
RL7_HELAH6.372e-1235.3450S ribosomal protein L7/L12 OS=Helicobacter acino... [more]
RL7_CITK86.372e-1233.0850S ribosomal protein L7/L12 OS=Citrobacter koseri... [more]
RL7_THEPX8.322e-1255.8850S ribosomal protein L7/L12 OS=Thermoanaerobacter... [more]
RL7_THEP38.322e-1255.8850S ribosomal protein L7/L12 OS=Thermoanaerobacter... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270874 ID=DY270874; Name=DY270874; organism=Citrus clementina; type=EST; length=1262bp
GAGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCT
CCCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATT
TCGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGC
CTCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACC
TGGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATG
TGCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAG
AGGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGT
TCGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATT
AAGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTT
GGTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGG
CTGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATG
GAGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCA
AGACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCT
ATATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAA
TACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATC
ATTTTAGGCCAACTTTTCTCTTTTTTTTTTGCCTTAATTTTTATTCTTAA
AATTTCATACAACTTCTGTGGAACTGGATTCTGATGACGGTTTCAGTTTA
TAAAAAATCTTTTGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
ACTTTCCTTGGACAAGTTTGGCATTTAAAAAAAGCTTGCTTAATAATTTT
TTTGAAAGAAAAGGGTCCAATACGTTAAAAAAAAAATATAATTGGCCTCC
CCCCGGAAATTCCCTAATTAGGGGAGTCAAAATAAAGGGGGCAATAAGGG
TTTCCGGGGGCACCCCGGGGCCCCGGGTTCCAAAAAACTCCTGGAAGTGT
TAATTGGGGAAAAAAAAAAAAAAATAATTTCACCTCGGTTGTTAAAAAAA
AAAACCCCCCCCCGGGCCATACAAAAAGAAAGAAAGTGCCCCTATTTTTT
TTTTTTCTTTAATCTCGGGGGGAAATATTATAAAAAAATAAACCTCCAAA
ATTTTTTTTTTT
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