DY270874

Overview
NameDY270874
Unique NameDY270874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1262
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_COXB2 (50S ribosomal protein L7/L12 OS=Coxiella burnetii (strain CbuG_Q212) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.413e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ ++ +S+++V+DL   +  K G+     + V  P  G                         F++K+  +G + K+ VIK +R  TGLGLKE+K+LVE VP+++K  V+K+EA+KI  +L+E GA+V +E
Sbjct:    9 ILEAVANMSVMDVVDLVKAMEEKFGVSAQAAIAVAGPVAG--------------GEAAAAEEKTEFNVKMVSFG-DNKIGVIKAIRTITGLGLKEAKDLVESVPSVVKESVSKEEAEKIKKELEEAGAKVELE 126          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_COXB1 (50S ribosomal protein L7/L12 OS=Coxiella burnetii (strain CbuK_Q154) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.413e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ ++ +S+++V+DL   +  K G+     + V  P  G                         F++K+  +G + K+ VIK +R  TGLGLKE+K+LVE VP+++K  V+K+EA+KI  +L+E GA+V +E
Sbjct:    9 ILEAVANMSVMDVVDLVKAMEEKFGVSAQAAIAVAGPVAG--------------GEAAAAEEKTEFNVKMVSFG-DNKIGVIKAIRTITGLGLKEAKDLVESVPSVVKESVSKEEAEKIKKELEEAGAKVELE 126          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_CHLPB (50S ribosomal protein L7/L12 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.413e-13
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNM----CVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            + ++V+EI  LSL E  +L   + +K G+   P +        PG                           FD++L+  GA  K+ VIK VR  TGLGLKE+KE+V+  P ++K  V+K+EA+K+  +LK+ GA+V ++
Sbjct:    4 IEALVEEIGKLSLTEASELVKALEDKFGVSAAPAVFAGAAAAAPG----------------GEAEAKEEQTEFDVELKAVGAN-KINVIKAVRSITGLGLKEAKEMVDGAPKVVKEAVSKEEAEKVAKELKDAGAEVELK 126          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_BEII9 (50S ribosomal protein L7/L12 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.413e-13
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +A IV+++S L+++E  +LA ++  K G+     + V   P  G +                       F + L   G + K++VIKEVRG TGLGLKE+K+LVE  P  +K GV+K+EA+KI A L++ GA+V ++
Sbjct:    4 LAKIVEDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAGPAAGGAAAAPVEEQTE-------------FTVVLAAVG-DKKIEVIKEVRGVTGLGLKEAKDLVEAAPKPVKEGVSKEEAEKIKAALEKAGAKVELK 126          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_RHILO (50S ribosomal protein L7/L12 OS=Rhizobium loti GN=rplL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.763e-13
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +A IVD++S L+++E  +L+ ++  K G+     + V   G   +                       FD+ L   GA+ K+ VIKEVR  TGLGLKE+K+LVE  P  +K GV+K +ADK  A+L+  GA+V ++
Sbjct:    4 LAKIVDDLSKLTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGAAAAAAPAEEKTE-------------FDVVLTDAGAQ-KINVIKEVRAITGLGLKEAKDLVEAAPKPVKEGVSKADADKFKAQLEAAGAKVDLK 125          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_OLICO (50S ribosomal protein L7/L12 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.763e-13
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            IVD++S L+++E  +LA ++  K G+     + V   PG                           F + L   G + K++VIKEVR  TGLGLKE+K+LVE  P  LK GV KDEA+KI A L++ GA+V ++
Sbjct:    7 IVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAAPGAAAGGAPAEEKTE--------------FQVVLAAAG-DKKIEVIKEVRAITGLGLKEAKDLVEGAPKPLKEGVAKDEAEKIKAALEKAGAKVELK 125          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_XANP2 (50S ribosomal protein L7/L12 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.527e-13
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +  +VDE+S L+++E  +LA ++  K G+     + V     G +                       F + L   G E K++VIKEVR  TGLGLKE+K+LVE  P  +K  V+KDEA+K+ A+L++ GA+V ++
Sbjct:    4 LTKLVDELSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAAPAGAAAAAVEEQTE--------------FTVVLAAAG-EKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEAVSKDEAEKLKAQLEKAGAKVELK 124          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_SYNPX (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.527e-13
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  137 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            S K   I++ +  LSL+E  +L   +    G+    +  V+M   G +                       FD+ LE + A AK+KV+K VR  TGLGL ++K LVE  P  +K G++KDEA+ +  +++EVG +V+++
Sbjct:    2 SAKTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGGGGEVAEEKTE---------FDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEIEEVGGKVTLK 131          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_METSB (50S ribosomal protein L7/L12 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.527e-13
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 2
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMM-PGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            IV+++S L+++E  +LA ++  K G+     + V   P  G +                       F + L  +G + K++VIKEVR  TGLGLKE+K+LVE  P  +K GVTK+EA+KI A L++ GA+V ++
Sbjct:    7 IVEDLSTLTVLEAAELAKLLEEKWGVSAAAAVAVAAGPAAGAAAAAPAEEQTE-------------FTVVLAAFG-DKKIEVIKEVRAVTGLGLKEAKDLVEAAPKPVKEGVTKEEAEKIKAALEKAGAKVELK 126          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_DESPS (50S ribosomal protein L7/L12 OS=Desulfotalea psychrophila GN=rplL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.527e-13
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            ++D I+ +S++E+ +L      K G+     + V   G+                          FD+ L   G+E K+KVIKEVR  TGLGLKE+K LVE  P  LK GV+KDEA ++ AKL+ VGA   ++
Sbjct:    8 VIDFIAGMSVLELSELIGEFEEKFGVSAAAPVAVAAAGVAAEAVEEKTE----------------FDVILASAGSE-KIKVIKEVRAITGLGLKEAKSLVESAPAALKEGVSKDEAAELKAKLEAVGATAEVK 123          
The following BLAST results are available for this feature:
BLAST of DY270874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
RL7_COXB24.413e-1333.0850S ribosomal protein L7/L12 OS=Coxiella burnetii ... [more]
RL7_COXB14.413e-1333.0850S ribosomal protein L7/L12 OS=Coxiella burnetii ... [more]
RL7_CHLPB4.413e-1332.8650S ribosomal protein L7/L12 OS=Chlorobium phaeoba... [more]
RL7_BEII94.413e-1335.7750S ribosomal protein L7/L12 OS=Beijerinckia indic... [more]
RL7_RHILO5.763e-1335.2950S ribosomal protein L7/L12 OS=Rhizobium loti GN=... [more]
RL7_OLICO5.763e-1337.3150S ribosomal protein L7/L12 OS=Oligotropha carbox... [more]
RL7_XANP27.527e-1334.5650S ribosomal protein L7/L12 OS=Xanthobacter autot... [more]
RL7_SYNPX7.527e-1331.6550S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_METSB7.527e-1335.8250S ribosomal protein L7/L12 OS=Methylocella silve... [more]
RL7_DESPS7.527e-1336.0950S ribosomal protein L7/L12 OS=Desulfotalea psych... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270874 ID=DY270874; Name=DY270874; organism=Citrus clementina; type=EST; length=1262bp
GAGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCT
CCCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATT
TCGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGC
CTCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACC
TGGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATG
TGCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAG
AGGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGT
TCGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATT
AAGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTT
GGTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGG
CTGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATG
GAGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCA
AGACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCT
ATATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAA
TACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATC
ATTTTAGGCCAACTTTTCTCTTTTTTTTTTGCCTTAATTTTTATTCTTAA
AATTTCATACAACTTCTGTGGAACTGGATTCTGATGACGGTTTCAGTTTA
TAAAAAATCTTTTGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
ACTTTCCTTGGACAAGTTTGGCATTTAAAAAAAGCTTGCTTAATAATTTT
TTTGAAAGAAAAGGGTCCAATACGTTAAAAAAAAAATATAATTGGCCTCC
CCCCGGAAATTCCCTAATTAGGGGAGTCAAAATAAAGGGGGCAATAAGGG
TTTCCGGGGGCACCCCGGGGCCCCGGGTTCCAAAAAACTCCTGGAAGTGT
TAATTGGGGAAAAAAAAAAAAAAATAATTTCACCTCGGTTGTTAAAAAAA
AAAACCCCCCCCCGGGCCATACAAAAAGAAAGAAAGTGCCCCTATTTTTT
TTTTTTCTTTAATCTCGGGGGGAAATATTATAAAAAAATAAACCTCCAAA
ATTTTTTTTTTT
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