DY270874

Overview
NameDY270874
Unique NameDY270874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1262
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_PECCP (50S ribosomal protein L7/L12 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.284e-12
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  155 IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            I++ ++ +S+++V++L   +  K G+     + V                               FD+ L+G GA  K+ VIK VRG TGLGLKE+K+LVE  P +LK GV+KD+A+ +   L+E GA+V ++
Sbjct:    8 ILEAVAAMSVMDVVELVSAMEEKFGVSAAAAVAVAA------------------GPAEVAEEKTEFDVVLKGIGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVSKDDAEALKKSLEEAGAEVEVK 121          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.284e-12
Identity = 43/135 (31.85%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM 550
            + SIV+++S L+L++  +L+  +  + G+     +  + P +                          F++ LE + A++K+ VIKEVR  T LGLKE+KELVE +   L+ GV+KDEA+++  KL+  GA +S+
Sbjct:    4 IESIVEKLSSLTLIQAAELSKRLEEEWGVSASAPVAAVAPAVXXDVAVAEKTE---------------FEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLEAAGATISL 123          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_BACWK (50S ribosomal protein L7/L12 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.284e-12
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  350 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            FD+ L   GA+ K+KVIK VR  TGLGLKE+KELV+  P  +K GVTK+EA+++ AKL+EVGA V ++
Sbjct:   53 FDVVLASAGAQ-KIKVIKAVREITGLGLKEAKELVDNTPKAIKEGVTKEEAEEMKAKLEEVGAAVEVK 119          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_BACSU (50S ribosomal protein L7/L12 OS=Bacillus subtilis GN=rplL PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 1.284e-12
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  350 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            FDL L G G++ K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+++ AKL+EVGA V ++
Sbjct:   57 FDLILAGAGSQ-KIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 123          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_BACA2 (50S ribosomal protein L7/L12 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.284e-12
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  350 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            FDL L G G++ K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+++ AKL+EVGA V ++
Sbjct:   57 FDLILAGAGSQ-KIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 123          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: MNP1_YEAST (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae GN=MNP1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.284e-12
Identity = 49/147 (33.33%), Postives = 74/147 (50.34%), Query Frame = 2
Query:  143 KVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGF----------SXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            K++ IV +IS L+L+E   L + ++  L I E     + MP  GF          +                       F +KL+ +  + K KVIKEV+G  GL L E+K+ VE  P +LK  V KD+A+KI   L+++GA+VS+E
Sbjct:   53 KISKIVQDISQLTLLETSSLINELKTVLNIPE-----ISMPMGGFMAGAAGAGAGNVPSSTGEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVLKENVAKDDAEKIKKTLEDLGAKVSLE 194          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_GLUOX (50S ribosomal protein L7/L12 OS=Gluconobacter oxydans GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.677e-12
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            +A IV+E+S L+++E  +L+ ++  K G+     + V     G +                       F + L   G + K+ VIKEVRG TGLGLKE+K+LVE  P  +K G +KDEA KI   L++ GA+V ++
Sbjct:    4 LAKIVEELSALTVLEAAELSKMLEEKWGVSAAAPVAVAAAAAGGAAAAPAEEQTE-------------FTVVLADAG-DKKINVIKEVRGITGLGLKEAKDLVEGAPKTVKEGASKDEAAKIKKALEDAGAKVEVK 125          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_CHLL2 (50S ribosomal protein L7/L12 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.677e-12
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  146 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            + ++V+EI  L+L E  +L   +  K G+   P    ++ G+  +                       FD+ L   G E+K+ VIK VR  TGLGLKE+K+LV+  P  +K  V+KDEA+KI  +LK+VGA V ++
Sbjct:    3 IETLVEEIGKLTLTEASELVKALEEKFGVSAAP---AIVAGIASAAPAGDAPAQEEKTE---------FDVVLTSAG-ESKINVIKVVRALTGLGLKEAKDLVDGAPKTVKEAVSKDEAEKIAKELKDVGAGVELK 125          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_BACP2 (50S ribosomal protein L7/L12 OS=Bacillus pumilus (strain SAFR-032) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.677e-12
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 2
Query:  350 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            FDL L G G + K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+++ AKL+EVGA V ++
Sbjct:   55 FDLVLAGAG-DQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 121          
BLAST of DY270874 vs. ExPASy Swiss-Prot
Match: RL7_BACLD (50S ribosomal protein L7/L12 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.677e-12
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 2
Query:  350 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 553
            FDL L G G + K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+++ AKL+EVGA V ++
Sbjct:   57 FDLVLAGAG-DQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEVK 123          
The following BLAST results are available for this feature:
BLAST of DY270874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
RL7_PECCP1.284e-1233.0850S ribosomal protein L7/L12 OS=Pectobacterium car... [more]
RL7_LIBAC1.284e-1231.8550S ribosomal protein L7/L12 OS=Liberibacter afric... [more]
RL7_BACWK1.284e-1257.3550S ribosomal protein L7/L12 OS=Bacillus weihenste... [more]
RL7_BACSU1.284e-1257.3550S ribosomal protein L7/L12 OS=Bacillus subtilis ... [more]
RL7_BACA21.284e-1257.3550S ribosomal protein L7/L12 OS=Bacillus amyloliqu... [more]
MNP1_YEAST1.284e-1233.3354S ribosomal protein L12, mitochondrial OS=Saccha... [more]
RL7_GLUOX1.677e-1234.5650S ribosomal protein L7/L12 OS=Gluconobacter oxyd... [more]
RL7_CHLL21.677e-1234.5650S ribosomal protein L7/L12 OS=Chlorobium limicol... [more]
RL7_BACP21.677e-1257.3550S ribosomal protein L7/L12 OS=Bacillus pumilus (... [more]
RL7_BACLD1.677e-1257.3550S ribosomal protein L7/L12 OS=Bacillus lichenifo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270874 ID=DY270874; Name=DY270874; organism=Citrus clementina; type=EST; length=1262bp
GAGACATTTACGGTTCATTACCCTACACGTGTCCCGAAATTTCAAATCCT
CCCTTCAAAACCCTAGAAGTGCCACGAACAGTCATCTCCTTAATCGAATT
TCGGCACGTGATTATTGCACTCCTTCACAAGAACCGTCGGAGAAGGTTGC
CTCAATCGTCGACGAAATATCATGCCTCAGTCTGGTCGAAGTTATGGACC
TGGCCGATGTCGTGCGGAACAAATTGGGAATTAAGGAAATGCCGAACATG
TGCGTAATGATGCCCGGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAG
AGGAGGAACTGGGACCGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGT
TCGATTTGAAGCTGGAAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATT
AAGGAAGTTAGAGGGTTTACGGGTTTGGGGCTGAAAGAGTCTAAAGAGTT
GGTAGAGAAAGTTCCCACTTTGTTGAAAAGGGGCGTTACCAAAGACGAGG
CTGACAAAATTGTTGCTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATG
GAGTGAGCTTGAGTTCATCAGAGGAGTGAATGATGAAGATCTTGAAGTCA
AGACTCTGGAGCTATGGCTGGTTAATATCAAAAGTATCCGATTCCGATCT
ATATCATTCTTCGACTATCTGTGAGGGTGATAAACGCATGTCTTTCATAA
TACACAACATTCATTGATAAAGCTAATTTGTTATGTTCCCAGATAGAATC
ATTTTAGGCCAACTTTTCTCTTTTTTTTTTGCCTTAATTTTTATTCTTAA
AATTTCATACAACTTCTGTGGAACTGGATTCTGATGACGGTTTCAGTTTA
TAAAAAATCTTTTGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
ACTTTCCTTGGACAAGTTTGGCATTTAAAAAAAGCTTGCTTAATAATTTT
TTTGAAAGAAAAGGGTCCAATACGTTAAAAAAAAAATATAATTGGCCTCC
CCCCGGAAATTCCCTAATTAGGGGAGTCAAAATAAAGGGGGCAATAAGGG
TTTCCGGGGGCACCCCGGGGCCCCGGGTTCCAAAAAACTCCTGGAAGTGT
TAATTGGGGAAAAAAAAAAAAAAATAATTTCACCTCGGTTGTTAAAAAAA
AAAACCCCCCCCCGGGCCATACAAAAAGAAAGAAAGTGCCCCTATTTTTT
TTTTTTCTTTAATCTCGGGGGGAAATATTATAAAAAAATAAACCTCCAAA
ATTTTTTTTTTT
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