DY270878

Overview
NameDY270878
Unique NameDY270878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1178
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY270878 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.162e-18
Identity = 67/191 (35.08%), Postives = 92/191 (48.17%), Query Frame = 3 
Query:  351 VDDVKDMFGKSLLLELVSAELDP-------KTGAEKPTIKGFAH----RAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGP-RNGPVNITCGSWVQSEHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDG-QGERKTHDKIYDYDVFNDLGVPGFLFQVARRVLGGKN 881
            +D + +  GK +  +L+S+           K GAE    +          GE K G + ++ + E     G  GAI+V N H  E  L  I L D P R+G +     SW+      +  R+FF N +YLPSQ P  L   R +EL NLRGD  QG  + HD+IY YDV+NDLG         R +LGG +
Sbjct:   41 IDGIGEFLGKGVTCQLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFG-LTFDWEVE---KLGVPGAIVVNNYHSSEFLLKTITLHDVPGRSGNLTFVANSWIYPAANYRYSRVFFANDTYLPSQMPAALKPYRDDELRNLRGDDQQGPYQEHDRIYRYDVYNDLG-------EGRPILGGNS 220

HSP 2 Score: 24.6386 bits (52), Expect = 2.162e-18
Identity = 10/22 (45.45%), Postives = 12/22 (54.55%), Query Frame = 1 
Query:  883 PYPKRCRTGSPPCGENPGFEPR 948
            PYP+R RT   P   +P  E R
Sbjct:  223 PYPRRGRTERKPNASDPSLESR 244
The following BLAST results are available for this feature:
BLAST of DY270878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_HORVU2.162e-1835.08Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270878 ID=DY270878; Name=DY270878; organism=Citrus clementina; type=EST; length=1178bp
TCTCTATAAAAATAGTGGATTCTTCTGCACTTCAGCATCACAGAGCTAGC
CAAGAAAATTAAGTATCAAGCATATCCTATACTCCTGAAAGAATGTTGAA
GCCACAAGTCCATCAGTCTCATCAATCTCTCAAACCCCTAGTTCCATTAT
CCAAGCCATTTCTCCGGGGAAATTTTCATGCTTTTCGTGCACTTCAGTCA
AGTAGTTCAATAAAAAATATACCCAAAATTAGAATTGGGATATCTCCTAG
TGTGAATATCAAAGCAATAACAACTTTTACTCAAAAGTCTACCCAAGTTA
AGGCTTTTGTCACTATTAAACCCTCTGTTGGTGGTCTTGTCTCAGGTTTT
GTAGACGATGTAAAGGATATGTTTGGTAAATCACTCCTGCTGGAGCTTGT
TAGCGCTGAGCTTGATCCTAAGACGGGAGCAGAGAAGCCCACCATCAAAG
GTTTTGCACACAGAGCGGGCGAGGATAAGGACGGACACATAATATACGAG
TCAAAATTCGAAGTTCCACCAAGTTTTGGAGAAGTTGGTGCCATATTGGT
GGAAAATGAGCACCACAAAGAGATGTATTTGAATGATATTGTTCTGGATG
GTCCCCGGAATGGTCCTGTGAACATAACATGTGGTTCATGGGTTCAGTCA
GAGCACGTTAACAAACAGAAGAGAATTTTCTTTACAAACAAGTCATACTT
GCCTTCACAAACCCCTAATGGATTGACGAGGCTAAGAGCTGAAGAACTTC
TTAATCTGCGAGGAGACGGACAAGGAGAGCGCAAAACTCATGATAAAATT
TACGATTATGACGTGTTCAATGATCTCGGAGTCCCTGGATTTTTGTTCCA
AGTTGCACGACGGGTGCTTGGTGGCAAAAACACCCTATCCTAAGCGTTGT
AGAACTGGAAGCCCACCTTGTGGAGAAAATCCCGGCTTCGAACCGAGGAC
CTAATTCATTACTTTACAGGAAATAAAACATTCCCCGAAAATAAGCAACC
AAATTTTTCCCCCAAGCCTCTGTACCCGGGGTTTGCAGGGATTTGTACTT
TCATTAAAAAACCCCCATTTTTTGAACCTGTATCTTAGAATTTTCCGATA
TTTCCAAAACTTTAAAAAAAAAACCCTTCTACACGAAAGGGTTTTATACG
TGGTCCCCTGCCCCCGGGAAAACGTTTT
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