DY270887

Overview
NameDY270887
Unique NameDY270887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1214
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE_PSEU5 (Protoheme IX farnesyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=cyoE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.738e-27
Identity = 70/186 (37.63%), Postives = 106/186 (56.99%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            R Y EL+K ++ +L++ TS  G  L + + +    L +   G  + A  A ++N + +   D+ M RT +RPL  GR+S   A+T+A  +GV+G ALL    N L A L  ++LI YA +YT  LK+  P N  +G + GA PPLLGW A  G V+   ++L   ++ W  PHF ALA   +++YA
Sbjct:   15 RDYLELTKPKVVLLMLITSLVGMFLATRAGVPWTVLLFGNLGIALCAGGAAAVNHVVDRQIDSVMARTHKRPLAEGRVSPAAALTFAFVLGVSGLALLLTFTNALAAWLTLASLIGYAVIYTGFLKRATPQNIVIGGLAGAAPPLLGWVAVTGQVTAEPLLLVLIIFAWTPPHFWALAIHRKDEYA 200          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE_MARAV (Protoheme IX farnesyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=cyoE PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 8.738e-27
Identity = 68/186 (36.56%), Postives = 106/186 (56.99%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            R Y EL+K R+  L++ TS  G  L +    + + L +   G  ++A +A  +N + +   D  M RT +RP+ +GRI+   A+ +A+ +   G  +L W+ N LTA L  ++L+ YA VYT  LK+  P N  +G + GA+PPLLGWTA  G V  + ++L   ++ W  PHF ALA   + +YA
Sbjct:   18 RDYLELTKPRVVALMILTSVIGMLLAAPGVPEWSVLLFGNLGIALLAGAAAVVNHVVDQKIDTVMARTRKRPVATGRIAPLDALLFATVLAALGMVVLVWQVNELTAWLTLASLVGYAGVYTLFLKRATPQNIVIGGLAGAMPPLLGWTAVTGQVEGHALLLVLIIFAWTPPHFWALAIHRKEEYA 203          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_PROMA (Protoheme IX farnesyltransferase OS=Prochlorococcus marinus GN=ctaB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.738e-27
Identity = 75/181 (41.44%), Postives = 100/181 (55.25%), Query Frame = 1
Query:  343 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDY 882
            E++K RL  L++AT+  G AL  G  +    L  T  G  + AA+A +LN L+E   D +MKRT  R LP+G++S     T A S  +A  ALL    N L AGL+   L  Y  +YT  LK     N  +G + GAIPPL+G  AA GH+ L+G  L A +  W   HF ALA L ++DY
Sbjct:   32 EVAKPRLIPLLLATTLGGMALSEGWPLPSPRLACTLGGGALAAAAAGALNCLWEQDLDGRMKRTSSRALPAGKLSPSAVFTGAISCTLAAAALLVSGVNCLAAGLSLLGLCSYVLLYTAFLKPRTSQNIVIGGVAGAIPPLVGAAAATGHIGLSGWWLFALVMVWTPAHFWALAILLKDDY 212          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE_TERTT (Protoheme IX farnesyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=cyoE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.141e-26
Identity = 70/186 (37.63%), Postives = 108/186 (58.06%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            R Y+EL+K ++ ML++ TS  G  L + S   L  L     G  + A +A ++N L +   D KM RT  RP+ +GRI+  +A+ +++ +G  G  +L+   N LTA L  ++L+ YA +YT  LK+  P N  +G + GA PPLLGWTA  G +  +G++L   ++ W  PHF ALA   + +YA
Sbjct:   23 RDYYELTKPKVVMLMLLTSLIGMLLATPSPAPLWLLVLGNLGIGLCAGAAAAVNHLVDRHVDVKMARTFHRPVANGRITPTNALLFSALLGGVGLWILSSFINALTAWLTLASLLGYAVIYTLFLKRATPQNIVIGGLAGAAPPLLGWTAVTGELDGHGLLLVLIIFAWTPPHFWALALYRKKEYA 208          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_SYNPW (Protoheme IX farnesyltransferase OS=Synechococcus sp. (strain WH7803) GN=ctaB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.141e-26
Identity = 78/183 (42.62%), Postives = 98/183 (53.55%), Query Frame = 1
Query:  343 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAA 888
            E++K RL  L++AT+  G AL  G  +    L  T  G  + AA+A  LN L+E   D +M+RT  R LPSGR+S   A   A S  +A   LL    N L AGL+   L  Y  +YT  LK     N  +G + GAIPPL+G  AA GHV L G  L A +  W   HF ALA L R+DY A
Sbjct:   30 EVAKPRLIPLLLATTLGGMALTEGWPLSSPRLVCTLGGGALAAAAAGVLNCLWEQELDGRMQRTSGRALPSGRLSPTAAFAGAVSCALAAATLLVSGVNCLAAGLSLLGLCSYVLLYTALLKPRTTQNIVIGGVAGAIPPLVGAAAATGHVGLGGWWLFALVMVWTPAHFWALALLLRDDYRA 212          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE_SHEB5 (Protoheme IX farnesyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=cyoE PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.490e-26
Identity = 72/186 (38.71%), Postives = 101/186 (54.30%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            R Y+E++K ++  L++ T   G  L     + +  L     G  M+A SA +LN L +   D  M RT  RPLP GRIS   A+ +A+S+G  G  +L    N LTA L  ++LI YA VYT  LK+    N  +G + GA+PPLLGWTA       + ++L   ++ W  PHF ALA   R +YA
Sbjct:   19 RAYFEMTKPKVVALMLLTVLVGMCLAVPHAVPVQPLLAGMLGIAMMAGSAAALNHLIDRRIDGLMARTYNRPLPKGRISATRALIFAASLGSLGFIVLYSLVNPLTAWLTFASLIGYALVYTAYLKRATSQNIVIGGLAGAMPPLLGWTAVTNEFHGHALLLVIIIFTWTPPHFWALAIHRRAEYA 204          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE1_SHEB9 (Protoheme IX farnesyltransferase 1 OS=Shewanella baltica (strain OS195) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.490e-26
Identity = 72/186 (38.71%), Postives = 101/186 (54.30%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            R Y+E++K ++  L++ T   G  L     + +  L     G  M+A SA +LN L +   D  M RT  RPLP GRIS   A+ +A+S+G  G  +L    N LTA L  ++LI YA VYT  LK+    N  +G + GA+PPLLGWTA       + ++L   ++ W  PHF ALA   R +YA
Sbjct:   19 RAYFEMTKPKVVALMLLTVLVGMCLAVPHAVPVQPLLAGMLGIAMMAGSAAALNHLIDRRIDGLMARTYNRPLPKGRISATRALIFAASLGSLGFIVLYSLVNPLTAWLTFASLIGYALVYTAYLKRATSQNIVIGGLAGAMPPLLGWTAVTNEFHGHALLLVIIIFTWTPPHFWALAIHRRAEYA 204          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE1_SHEB8 (Protoheme IX farnesyltransferase 1 OS=Shewanella baltica (strain OS185) GN=cyoE1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.490e-26
Identity = 72/186 (38.71%), Postives = 101/186 (54.30%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            R Y+E++K ++  L++ T   G  L     + +  L     G  M+A SA +LN L +   D  M RT  RPLP GRIS   A+ +A+S+G  G  +L    N LTA L  ++LI YA VYT  LK+    N  +G + GA+PPLLGWTA       + ++L   ++ W  PHF ALA   R +YA
Sbjct:   19 RAYFEMTKPKVVALMLLTVLVGMCLAVPHAVPVQPLLAGMLGIAMMAGSAAALNHLIDRRIDGLMARTYNRPLPKGRISATRALIFAASLGSLGFIVLYSLVNPLTAWLTFASLIGYALVYTAYLKRATSQNIVIGGLAGAMPPLLGWTAVTNEFHGHALLLVIIIFTWTPPHFWALAIHRRAEYA 204          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_LEPCP (Protoheme IX farnesyltransferase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ctaB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.490e-26
Identity = 73/194 (37.63%), Postives = 101/194 (52.06%), Query Frame = 1
Query:  316 IRHYGRCYWELSKARLSMLVVATSGTGFAL---GSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            +  + R Y  L+K R+  L+V  +  G  L   G+    DL    W   G  +VA++A + N L E   D++MKRT  RP   G +S   A+ +++ +  AG A+L    N LTA L     + YA +YT  LK + P N  +G I GA+PPLLGW A  G V   G+IL   ++ W  PHF ALA     DYA
Sbjct:   11 VSSHWRQYVALTKPRVVQLIVFCAAIGMLLAVPGAPGLADLGKALWATLGIWLVASAAAAFNCLIEQQIDSRMKRTAWRPTARGELSRTQALIFSAVLCSAGMAVLHEAVNPLTAWLTLGTFVGYAVIYTVVLKPLTPQNIVIGGISGAMPPLLGWAAMTGEVGPEGLILCLIIFLWTPPHFWALALYRAEDYA 204          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_GLOVI (Protoheme IX farnesyltransferase OS=Gloeobacter violaceus GN=ctaB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.490e-26
Identity = 71/184 (38.59%), Postives = 104/184 (56.52%), Query Frame = 1
Query:  337 YWELSKARLS-MLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDY 882
            Y++L+K R+  +L++ T+G  +  G G    L  L  T  G  + A+SAN+ N L +   D  M+RT RR +P+GRI    A  +A+++GVA  A+LA  AN+  A LA S +  Y  +YT  LK+    N  +G   GAIPPL+GW A  G +  +  +L   ++ W  PHF ALA + R DY
Sbjct:   23 YYQLTKPRIQVLLLITTAGAMWIAGKGHVEPLL-LLVTLLGGTLAASSANAFNCLIDRDIDLLMERTRRRAIPAGRILPWQAALFATALGVASFAVLAAFANLFAALLAISGIGFYVVIYTLWLKRTTTQNIVIGGAAGAIPPLVGWAAVTGDLGWSAWVLFGIIFMWTPPHFWALAMMIREDY 205          
The following BLAST results are available for this feature:
BLAST of DY270887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYOE_PSEU58.738e-2737.63Protoheme IX farnesyltransferase OS=Pseudomonas st... [more]
CYOE_MARAV8.738e-2736.56Protoheme IX farnesyltransferase OS=Marinobacter a... [more]
COXX_PROMA8.738e-2741.44Protoheme IX farnesyltransferase OS=Prochlorococcu... [more]
CYOE_TERTT1.141e-2637.63Protoheme IX farnesyltransferase OS=Teredinibacter... [more]
COXX_SYNPW1.141e-2642.62Protoheme IX farnesyltransferase OS=Synechococcus ... [more]
CYOE_SHEB51.490e-2638.71Protoheme IX farnesyltransferase OS=Shewanella bal... [more]
CYOE1_SHEB91.490e-2638.71Protoheme IX farnesyltransferase 1 OS=Shewanella b... [more]
CYOE1_SHEB81.490e-2638.71Protoheme IX farnesyltransferase 1 OS=Shewanella b... [more]
COXX_LEPCP1.490e-2637.63Protoheme IX farnesyltransferase OS=Leptothrix cho... [more]
COXX_GLOVI1.490e-2638.59Protoheme IX farnesyltransferase OS=Gloeobacter vi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270887 ID=DY270887; Name=DY270887; organism=Citrus clementina; type=EST; length=1214bp
CGGATTGCTCCCTTATAAACAAAAAATAAAAATAAAAATAAATAAATAAA
TAAATGATCTGGAAAATTCATTAGCAATACTCGGTTTCATGAAACCAAGC
AAATTCAACTAATCCAGGGTTCACCAGAATACCAAAACATGTGGAGAAAC
GTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCAATCGGAGTCAACA
TTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAATGCCACGGTGTAC
GATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCACCGGTGCAGCTGCT
GATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCTATTGGGAACTCTC
CAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCAGGAACTGGATTTG
CATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACTTTGTTGGACCTGT
ACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTCTTAATCAGTTGTT
TGAGATAAGCAATGATGCCAAAATGAAGCGAACAATGCGAAGACCTCTGC
CTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTGGGCATCTTCTGTT
GGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTAATATGTTGACAGC
TGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTTGTGTACACGCCAT
TGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGCTATTGTTGGAGCT
ATTCCACCTCTTCTTGGGTGGACTGCAGCTGTTGGCCATGTTTCTCTNAA
TGGAATGATTCTCCCTGCAACTCTCTATTTTTGGCAAAAACCCCATTTTA
TGGCTCTTGCCTACTTGTGCCGCAACGATTATGCTGCCCGGAGGATATAG
GATGATCTCCCTTGCTGAAGCTTCCGGTCAAAAAACTGCTTTGGTGGCCC
TCAAGAAACTGCTGGTACTGGGCCCCTTTGGGAAACTTGGCCCTATGATT
GGGGGGTGAATTCCTGGTTGGTTTTTTTCTTAAATCCACCCTTGAAACCC
TCAAACAAAAAAATGGCGCGGGCCTTTTTTCTTTTCTATCCAAAACCAAA
AAATACCCAAAAAACCCACAAAAAAAAGTTTTTCCGGGGCCAACCCCCCC
CTGTAATCTTTTCCCAAACTTTTCTTATTGTTCCCGGGGGCCCCCCATTT
TTTTCCCCGCCCTC
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