DY270887

Overview
NameDY270887
Unique NameDY270887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1214
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_CYAP4 (Protoheme IX farnesyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ctaB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.337e-26
Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            Y++L+K RL +L + T+  G  + +   +D      T     M A SAN++N L++   D  M+RT  RPLPSGR+    A+ +A ++ V   +L    AN+L+A L  + + +Y  VYT  LK+    N  +G   GAIPPL+GW A  G +S    +L A ++ W  PHF  LA L + DYA
Sbjct:   23 YYQLTKPRLIVLFLITTAAGMWVAARGEVDPVLALITLLTGAMAAGSANTINCLYDRDIDYIMERTRHRPLPSGRVQPWEALVFAIALAVGAFSLQTLCANLLSACLEMAGIAVYVGVYTHWLKRSSTQNIVIGGAAGAIPPLVGWAAVTGELSWAAWVLFAIIFIWTPPHFWPLAMLIQEDYA 206          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_SYNS3 (Protoheme IX farnesyltransferase OS=Synechococcus sp. (strain CC9311) GN=ctaB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.664e-26
Identity = 78/183 (42.62%), Postives = 97/183 (53.01%), Query Frame = 1
Query:  343 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAA 888
            E++K RL  L++AT+  G AL  G  +    L  T  G  + AA+A  LN L+E   D +M RT  R LPSGR+S   A   A S  +A  ALL    N L AGL+   L  Y  +YT  LK     N  VG + GAIPPL+G  AA GH+ L G  L A +  W   HF ALA L  +DY A
Sbjct:   24 EVAKPRLIPLLLATTLGGMALTEGWPLSSPRLVCTLGGGALAAAAAGVLNCLWEQELDGRMLRTSGRALPSGRLSPSAAFVGAVSCTLAAAALLVSGVNCLAAGLSLLGLCSYVLLYTALLKPRTTQNIVVGGVAGAIPPLVGAAAATGHIGLGGWWLFALVMVWTPAHFWALALLLHDDYRA 206          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_ACAM1 (Protoheme IX farnesyltransferase OS=Acaryochloris marina (strain MBIC 11017) GN=ctaB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.664e-26
Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            +++L+K RL +L + T+     + S   +       T       A SAN++N +++   D  M+RT  RPLPSGRI V  A  +A+S+ +    LLA+ AN+L+A LA + + +Y  VYT  LK+    N  +G   GAIPPL+GW A  G +S    +L A ++ W  PHF  LA +   DY+
Sbjct:   23 FYQLTKPRLILLFLITTAAAMWVASSGQVGPRLFLTTLLAGACAAGSANTINCIYDRDIDYIMERTRHRPLPSGRIQVWQASVFAASLALTAFFLLAFGANLLSACLAMAGIAVYIGVYTYWLKRSSTQNIVIGGAAGAIPPLVGWAAVTGELSWAAWVLFAIIFIWTPPHFWPLAMMIEEDYS 206          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_ACICJ (Protoheme IX farnesyltransferase OS=Acidiphilium cryptum (strain JF-5) GN=ctaB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 9.661e-26
Identity = 66/180 (36.67%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  346 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDY 882
            L K R+  LVV T   G  +  G    + G         M A +A ++N  ++   DA M+RT  RP+P+GRIS   A+ +  ++      L+    N+L AGL A+++  Y F+YT  LK+  P N  +G   GA PP++GW AA GHV L  ++L A ++FW  PHF AL+     DY
Sbjct:   34 LLKPRVLYLVVYTGAAGLLVAPGGINPILGFT-AILCIAMAAGAAGAINMWYDRDIDAVMRRTAGRPIPTGRISPDGALAYGVALSALSVLLMWLATNLLAAGLLAASIGFYVFIYTMWLKRRTPQNIVIGGAAGAFPPVIGWAAATGHVGLLPVLLFAIIFFWTPPHFWALSLFASADY 212          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE_VIBVY (Protoheme IX farnesyltransferase OS=Vibrio vulnificus (strain YJ016) GN=cyoE PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.262e-25
Identity = 71/193 (36.79%), Postives = 100/193 (51.81%), Query Frame = 1
Query:  310 SLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            S +R     YW L+K ++  L++ TS  G +L                G  ++A SA + N L +   DAKM RT RRPLP G +S  + + +A  +G  G   L    N LTA L  ++L+ YA VYT  LK+  P N  +  I GA+PPLLGWT+  G +  +  +L   ++ W  PHF ALA   + DYA
Sbjct:   10 SQLRSPWSTYWTLTKPKVVALMLLTSVVGMSLAPHEHFTWHQALIALVGIALMAGSAAAFNHLIDRRIDAKMARTYRRPLPKGDVSPFNVLLFALLIGSLGFLSLMLWVNSLTAYLTFASLLGYAVVYTLYLKRATPQNIVIAGIAGAMPPLLGWTSITGELHPHAWLLVMIIFIWTPPHFWALAIHRKEDYA 202          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE_VIBVU (Protoheme IX farnesyltransferase OS=Vibrio vulnificus GN=cyoE PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.262e-25
Identity = 71/193 (36.79%), Postives = 100/193 (51.81%), Query Frame = 1
Query:  310 SLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            S +R     YW L+K ++  L++ TS  G +L                G  ++A SA + N L +   DAKM RT RRPLP G +S  + + +A  +G  G   L    N LTA L  ++L+ YA VYT  LK+  P N  +  I GA+PPLLGWT+  G +  +  +L   ++ W  PHF ALA   + DYA
Sbjct:   10 SQLRSPWSTYWTLTKPKVVALMLLTSVVGMSLAPHEHFTWHQALIALVGIALMAGSAAAFNHLIDRRIDAKMARTYRRPLPKGDVSPFNVLLFALLIGSLGFLSLMLWVNSLTAYLTFASLLGYAAVYTLYLKRATPQNIVIAGIAGAMPPLLGWTSITGELHPHAWVLVMIIFIWTPPHFWALAIHRKEDYA 202          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE_PSYIN (Protoheme IX farnesyltransferase OS=Psychromonas ingrahamii (strain 37) GN=cyoE PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.262e-25
Identity = 73/192 (38.02%), Postives = 106/192 (55.21%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFAL----GSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAARRI 897
            Y EL K ++  L+V T+  G AL    G G  + L  L     G  ++++SA  +N + +   DAKM RT  RPL    +S R A+ +++ +G  G +LL + AN LTA +    L+ YAFVYT  LK+  P N  +G + GA+PPLLGW +  G ++    IL   ++ W  PHF ALA   + DYA  +I
Sbjct:   32 YLELCKIKVVALLVLTALVGLALAPDMGRGYFVQLLSLF----GIGLLSSSAAVINHIVDSKIDAKMVRTKNRPLVRKAVSRRQALIFSAVIGTLGFSLLVFAANWLTAQMTLFALVGYAFVYTMFLKRATPQNIVIGGLAGAMPPLLGWISETGQLAAQPWILVMIIFTWTPPHFWALAIHRKADYAKAKI 219          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: COXX_SYNSC (Protoheme IX farnesyltransferase OS=Synechococcus sp. (strain CC9605) GN=ctaB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.648e-25
Identity = 76/183 (41.53%), Postives = 96/183 (52.46%), Query Frame = 1
Query:  343 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYAA 888
            E++K RL  L++AT+  G AL  G  +    L  T  G  + +A+A  LN L+E   D +M RT  R LPSGR+S   A   A +  +A   LL    N L AGL+   L  Y  +YT  LK     N  +G + GAIPPL+G  AA GHV L G  L A +  W   HF ALA L R DY A
Sbjct:   29 EVAKPRLIPLLLATTLGGMALSEGWPLSSPRLVCTLGGGALASAAAGVLNCLWEQDLDGRMARTSGRALPSGRLSPTSAFIGAIACTLAAAMLLVSGVNCLAAGLSLLGLCSYVLLYTALLKPRTSQNIVIGGVAGAIPPLVGAAAATGHVGLGGWWLFALVMVWTPAHFWALALLLREDYRA 211          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE_PSEMY (Protoheme IX farnesyltransferase OS=Pseudomonas mendocina (strain ymp) GN=cyoE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.152e-25
Identity = 67/186 (36.02%), Postives = 104/186 (55.91%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDYA 885
            R Y EL+K R+ +L++ TS  G  L + + +    L +   G  + A +A ++N + +   D+ M RT +RP+ +GR+S   A+ +A  +  AG  LL    N L A L  ++L+ YA +YT  LK+  P N  +G + GA PPLLGW A  GH+S   ++L   ++ W  PHF ALA   + +YA
Sbjct:   15 RDYLELTKPRVVLLMLITSLVGMFLATRAGVPWTVLLFGNLGIGLCAGAAAAVNHVVDRRIDSIMARTHKRPVTAGRVSPAAAIAFALLLATAGMGLLLLFTNQLAAWLTLASLLGYAVIYTGFLKRATPQNIVIGGLAGAAPPLLGWVAVTGHLSAEPLLLVLIIFAWTPPHFWALAIHRKAEYA 200          
BLAST of DY270887 vs. ExPASy Swiss-Prot
Match: CYOE_LEGPA (Protoheme IX farnesyltransferase OS=Legionella pneumophila (strain Paris) GN=cyoE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.152e-25
Identity = 70/185 (37.84%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPATLYFWQKPHFMALAYLCRNDY 882
            R Y EL K R+ +L++ T   G  L +   + L  + +T  G  + A SA ++N L +   D+ M RT +RP+  GR+SV+ A+ +A  +G+ G +LL    N LTA L    LI YA VYT  LK+    N  +G + GA PPLLGWTA  G +    ++L   ++ W  PHF ALA     +Y
Sbjct:   14 RDYVELCKPRVVLLMLLTVIVGMYLAAPGWVSLRLIAFTLLGIGLCAGSAAAINHLVDRHIDSIMARTKKRPVAYGRVSVKQALWFAVIIGLMGLSLLILFVNQLTALLTFVTLIGYAGVYTGYLKRATSQNIVIGGLAGAAPPLLGWTAVTGQLDPQALLLVLIIFTWTPPHFWALAIYRYKEY 198          
The following BLAST results are available for this feature:
BLAST of DY270887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
COXX_CYAP44.337e-2636.96Protoheme IX farnesyltransferase OS=Cyanothece sp.... [more]
COXX_SYNS35.664e-2642.62Protoheme IX farnesyltransferase OS=Synechococcus ... [more]
COXX_ACAM15.664e-2636.41Protoheme IX farnesyltransferase OS=Acaryochloris ... [more]
COXX_ACICJ9.661e-2636.67Protoheme IX farnesyltransferase OS=Acidiphilium c... [more]
CYOE_VIBVY1.262e-2536.79Protoheme IX farnesyltransferase OS=Vibrio vulnifi... [more]
CYOE_VIBVU1.262e-2536.79Protoheme IX farnesyltransferase OS=Vibrio vulnifi... [more]
CYOE_PSYIN1.262e-2538.02Protoheme IX farnesyltransferase OS=Psychromonas i... [more]
COXX_SYNSC1.648e-2541.53Protoheme IX farnesyltransferase OS=Synechococcus ... [more]
CYOE_PSEMY2.152e-2536.02Protoheme IX farnesyltransferase OS=Pseudomonas me... [more]
CYOE_LEGPA2.152e-2537.84Protoheme IX farnesyltransferase OS=Legionella pne... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YB13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270887 ID=DY270887; Name=DY270887; organism=Citrus clementina; type=EST; length=1214bp
CGGATTGCTCCCTTATAAACAAAAAATAAAAATAAAAATAAATAAATAAA
TAAATGATCTGGAAAATTCATTAGCAATACTCGGTTTCATGAAACCAAGC
AAATTCAACTAATCCAGGGTTCACCAGAATACCAAAACATGTGGAGAAAC
GTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCAATCGGAGTCAACA
TTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAATGCCACGGTGTAC
GATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCACCGGTGCAGCTGCT
GATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCTATTGGGAACTCTC
CAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCAGGAACTGGATTTG
CATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACTTTGTTGGACCTGT
ACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTCTTAATCAGTTGTT
TGAGATAAGCAATGATGCCAAAATGAAGCGAACAATGCGAAGACCTCTGC
CTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTGGGCATCTTCTGTT
GGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTAATATGTTGACAGC
TGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTTGTGTACACGCCAT
TGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGCTATTGTTGGAGCT
ATTCCACCTCTTCTTGGGTGGACTGCAGCTGTTGGCCATGTTTCTCTNAA
TGGAATGATTCTCCCTGCAACTCTCTATTTTTGGCAAAAACCCCATTTTA
TGGCTCTTGCCTACTTGTGCCGCAACGATTATGCTGCCCGGAGGATATAG
GATGATCTCCCTTGCTGAAGCTTCCGGTCAAAAAACTGCTTTGGTGGCCC
TCAAGAAACTGCTGGTACTGGGCCCCTTTGGGAAACTTGGCCCTATGATT
GGGGGGTGAATTCCTGGTTGGTTTTTTTCTTAAATCCACCCTTGAAACCC
TCAAACAAAAAAATGGCGCGGGCCTTTTTTCTTTTCTATCCAAAACCAAA
AAATACCCAAAAAACCCACAAAAAAAAGTTTTTCCGGGGCCAACCCCCCC
CTGTAATCTTTTCCCAAACTTTTCTTATTGTTCCCGGGGGCCCCCCATTT
TTTTCCCCGCCCTC
back to top