DY270910

Overview
NameDY270910
Unique NameDY270910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1250
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_BDEBA (Elongation factor Tu OS=Bdellovibrio bacteriovorus GN=tuf PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 9.015e-35
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 2
Query:  206 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            S   FTR K HVN+GTIGHVDHGKTTLTAAIT  LA  GKA+A+A+D+IDK+PEEK RGITI+T HVEYET  RHYAHVDCPGHADYVK
Sbjct:    2 SKEKFTRNKPHVNIGTIGHVDHGKTTLTAAITTTLAASGKAQAMAYDQIDKSPEEKARGITISTTHVEYETDNRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_RICHE (Elongation factor Tu OS=Rickettsia helvetica GN=tuf PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.177e-34
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G AKA A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAKATAYDQIDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_RICFE (Elongation factor Tu OS=Rickettsia felis GN=tuf PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.177e-34
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G AKA A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAKATAYDQIDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_RHOP2 (Elongation factor Tu OS=Rhodopseudomonas palustris (strain HaA2) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.177e-34
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETTNRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_RICPR (Elongation factor Tu OS=Rickettsia prowazekii GN=tuf PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.538e-34
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT +LA+ G AKA A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIILAKTGGAKATAYDQIDAAPEEKERGITISTAHVEYETQNRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_RHOPB (Elongation factor Tu OS=Rhodopseudomonas palustris (strain BisB18) GN=tuf PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.538e-34
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAHVEYETA RHYAHVDCPGHADYVK
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETANRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_RHOPA (Elongation factor Tu OS=Rhodopseudomonas palustris GN=tuf1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.538e-34
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETQNRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_RHOP5 (Elongation factor Tu OS=Rhodopseudomonas palustris (strain BisA53) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.538e-34
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAHVEYETA RHYAHVDCPGHADYVK
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETANRHYAHVDCPGHADYVK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.538e-34
Identity = 67/85 (78.82%), Postives = 77/85 (90.59%), Query Frame = 2
Query:  218 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            F RTK HVN+GTIGH+DHGKTTLTAAITK+ + +  +KA+A+DEIDKAPEEK+RGITIATAHVEYET  RHYAHVDCPGHADY+K
Sbjct:    6 FERTKPHVNIGTIGHIDHGKTTLTAAITKIASLKMGSKAVAYDEIDKAPEEKERGITIATAHVEYETTLRHYAHVDCPGHADYIK 90          
BLAST of DY270910 vs. ExPASy Swiss-Prot
Match: EFTU2_THETN (Elongation factor Tu-B OS=Thermoanaerobacter tengcongensis GN=tufB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.538e-34
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 2
Query:  218 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            F RTK HVNVGTIGHVDHGKTTLTAAIT +L++ G A+A  +DEIDKAPEEK RGITI T HVEYETAKRHYAHVDCPGHADYVK
Sbjct:    6 FERTKPHVNVGTIGHVDHGKTTLTAAITLILSKAGLAQAKGYDEIDKAPEEKARGITINTTHVEYETAKRHYAHVDCPGHADYVK 90          
The following BLAST results are available for this feature:
BLAST of DY270910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BDEBA9.015e-3577.53Elongation factor Tu OS=Bdellovibrio bacteriovorus... [more]
EFTU_RICHE1.177e-3480.46Elongation factor Tu OS=Rickettsia helvetica GN=tu... [more]
EFTU_RICFE1.177e-3480.46Elongation factor Tu OS=Rickettsia felis GN=tuf PE... [more]
EFTU_RHOP21.177e-3480.46Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_RICPR1.538e-3479.31Elongation factor Tu OS=Rickettsia prowazekii GN=t... [more]
EFTU_RHOPB1.538e-3480.46Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_RHOPA1.538e-3480.46Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_RHOP51.538e-3480.46Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_DESDG1.538e-3478.82Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU2_THETN1.538e-3482.35Elongation factor Tu-B OS=Thermoanaerobacter tengc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270910 ID=DY270910; Name=DY270910; organism=Citrus clementina; type=EST; length=1250bp
CTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCGGAATCAATGGCTT
CGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGTGCCGTTTTCATCC
CAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCTCCGACGCTTTCTC
CGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCTGTTAACCCCTGGT
GGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCACGTGAATGTGGGA
ACAATTGGACACGTTGATCATGGGAAGACTACACTTACTGCTGCGATTAC
CAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATTGCCTTTGATGAAA
TTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCAACGGCC
CATGTAGAGTATGAGACTGCTAAGCGTCACTATGCACATGTTGACTGTCC
TGGACATGCTGATTATGTTAAAGTAAGAAGTAAATATTCAATGCTGCCGG
GTAAATTTAGTTGTTAGAGCGATCCTCTGGGAAATTGATGTATTCTCAGT
GAAAAAAAAAAAGAGAAACAAAAGAAAGAAAGAAAAATTAAAAAGGCAAA
AATGATGTTAAGAGAATTCGAAGCTGCTGAGGTGTTAGTATGTTCCCTCA
ACAGCAACCTAATTTTATGGATAAAGTTTTACATTTGAAGCATAGCAGAA
GCAAAAGATTTAGCATGCTAACATTTTAAAGGACCTGCATTCATGTCTTG
CACGGTTTAGATATTTCATTTTTTTCTTGAAGTTTTGTCCCATCTAATTT
TCTAAACTCATATTCATTTCCAGAGATGTCAACAGGTTTCCCGAGTTTTT
TAGTTAACCACATGAAATAATCATGTAACCAACTGTTTTCTTGTGATTGA
TTTGTAAAACATGATTACTGGAGCTGCCCAATGGGACGGGGGGAATTTTG
GGTTGTCTCTGCTCCCTGGAGGGCCAATGCCCCAAAAAAAAGGAACAAAT
TCCTTCTTGGCACGTCAGGGGTGGGGGGGCCCCTCCCTTTGGGGGGCTTC
CTAAAAAAAGATTAAACTTTGTTTTAAAAAAAAAAAAAATTTGTGGGAAC
CTTGGGGGAAAAGGGGGACCCCCCCAAAAAATTTTCTTACCTTCTTCAAA
AATTTTCCCGTGGGGGAGAAAAAAAAAAACCCCATTTATTAATTTAAGAA
GGCCCTTCTCCCCCACAAATTTTCTCCTCCTTTTTACTAAAGAAGGGGGA
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